EMAGE mouse gene expression spatial database

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EMAGE:18085

Tm4sf1 transmembrane 4 superfamily member 1 ( MGI:104678)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_011928. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_011928_01	euxassay_011928_02	euxassay_011928_03	euxassay_011928_04

euxassay_011928_05	euxassay_011928_06	euxassay_011928_07	euxassay_011928_08	euxassay_011928_09

euxassay_011928_10	euxassay_011928_11	euxassay_011928_12	euxassay_011928_13	euxassay_011928_14

euxassay_011928_15	euxassay_011928_16	euxassay_011928_17	euxassay_011928_18	euxassay_011928_19

euxassay_011928_20	euxassay_011928_21	euxassay_011928_22	euxassay_011928_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

18085_wholemount_strong.wlz

18085_wholemount_moderate.wlz

18085_wholemount_weak.wlz

18085_wholemount_possible.wlz

18085_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:18085_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

medulla oblongata floor plate

strong

regional

strong expression: see section 12

metencephalon floor plate

strong

regional

strong expression: see section 12

spinal cord floor plate

strong

regional

strong expression: see section 10 11

cardiovascular system

weak

regional

weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

aorta

strong

regional

strong expression: see section 09 10 11 12 13

endocardial tissue

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 13 14 15 16

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T37142
Entity Detected:	Tm4sf1, transmembrane 4 superfamily member 1 ( MGI:104678)
Sequence:	sense strand is shown >T37142 AATCGTGGGATCTGCTTACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAAGGACCAAAGTGCAGCGAT GCCCATGGAGTATGGAACTACACCTTTGCCAGCACTGAGGGACAGTACCTTCTGAATTCCTCTATGTGGT CCAAGTGCTATGAGCCCAAGCATATTGTGGAGTGGCATGTGACTCTATTTTCTATCCTCTTGGCTTTTGC CGCAGTTGAATTCATCTTGTGTCTCATTCAAGTAATAAATGGAATGCTTGGAGGCTTATGTGGCTATTGC TGCTCTCGCCAACAGCAATATAACTGCTAAAAAAGAACACAAGACAGAAGGGCGTGCTTCCTGTATTTCA CTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTCTGCTTT TGTAAGGAAATGTGCTGACGTCATCACATGATGTCAGTGTTTACATTCACAAAACAAACAAGGCAGCAAA CTGCACTCTCTCCGAAGGGATTTTACAGACTTAAGGACTGTTCTCAGCATAGCTGAGATAAACTCTTCAG TGTTTGAGATAAAAATCAGAGCTAACTATTGTGCATATGTGCATTTTTTTTTAAATAAAAGATCTCCGAT TTCCTTTTTAAGACCAAGAAGGACCAAAATAAAAAAAAAAGAAAAACAAGAAAGATATATTTTACTGTTC ATATGCTGTTTCCCATTTGTATGTGAATGAGTCTCTAAGAAACCCTCTGAAGTGAGATTTTCTCTTACCT GGATTCGGAAATCTCATTGAG
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 94669. Forward Primer - name:094669_F_cDNA_Tm4sf1, sequence:AATCGTGGGATCTGCTTACTGT; Reverse Primer - name:094669_N_SP6_cDNA_Tm4sf1, sequence:CTCAATGAGATTTCCGAATCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:18089 same embryo
	EMAGE:18088 same embryo
	EMAGE:18084 same embryo
	EMAGE:18087 same embryo
	EMAGE:18086 same embryo
	EurExpress:euxassay_011928 same experiment
	MGI:4828746 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source