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EMAGE:18329

Sec63 SEC63-like (S. cerevisiae) ( MGI:2155302)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:18329
euxassay_012139_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:18329Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
18329_wholemount_strong.wlz
18329_wholemount_moderate.wlz
18329_wholemount_weak.wlz
18329_wholemount_possible.wlz
18329_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:18329_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31456
Entity Detected:Sec63, SEC63-like (S. cerevisiae) ( MGI:2155302)
Sequence:sense strand is shown

>T31456
GGAGCAGCCCACAGAAGACGGGCAGAGTGATGCCAACAAGATCAAGGCAAAAGGAGGATGGCAGCAGAAG
AACAAAGGACCCAAGAAAATGCCCAAATCCAAAAAAAAGAAGCCTTTAAAAAAGAAACCCACAACTGTGC
CCTTACCTCAGGCAAAGCAGCAGAAGCAAAAGCAGGCAAATGGAGTTGTTGGGAGTGAAGCTGCAATAAA
GGAGGAAGAAGACGACATTTCTGACAAGGGCAGTGATTCTGAAGAGGAAGAAACCAATAGAGATTCTCAG
AGTGAGAAAGAAGATGGTAGTGACAGGGAGTCTGATAGAGAGCAAGATGAGAAACAAAGCAAAGATGATG
AAGCAGAGTGGCAAGAGTTACAACAGAGTATACAGAGGAAAGAGAGAGCTCTTTTGGAGACCAAGTCAAA
GATAACACACCCTGTCTATAGTCTCTACTTTCCTGAGGAAAAACAAGAGTGGTGGTGGCTTTATATTGCA
GATAGGAAAGAACAAACATTAATATCCATGCCATATCATGTGTGCACACTGAAGGATACAGAAGAGGTAG
AACTGAAGTTTCCCGCACCCGGCAAGCCTGGAAATTATCAGTATACGGTGTTCCTGAGATCAGACTCCTA
TATGGGCTTGGATCAGATTAAACCACTGAAGTTGGAAGTTCATGAGGCCAAGCCTGTGCCAGAAAACCAC
CCACAGTGGGACACAGCGATAGAAGGTGACGAAGACCAGGAAGACAGTGAAGGATTTGAAGACAGCTTTG
AGGAAGAGGAGGAGGAAGAGGAAGGTGGAGACTAACCCGAGTGAGTGGACTACAGCGTTTGCACATCCTT
GCAAACATTGCTGCTCTGTGAGAGGTCATAAAGCAGCAGCAGTGAGGGCTGA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:5066822), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 25736. Forward Primer - name:025736_F_IRAV59-62_K10_Sec63, sequence:GGAGCAGCCCACAGAAGA; Reverse Primer - name:025736_R_SP6_IRAV59-62_K10_Sec63, sequence:ATCAGCCCTCACTGCTGC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:18326 same embryo
 EMAGE:18330 same embryo
 EMAGE:18327 same embryo
 EMAGE:18325 same embryo
 EMAGE:18328 same embryo
 EurExpress:euxassay_012139 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS