Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:18587

B230208H17Rik RIKEN cDNA B230208H17 gene ( MGI:2442633)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587
"Pseudo-wholemount" of euxassay_014539. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_014539_01 euxassay_014539_02 euxassay_014539_03 euxassay_014539_04
EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587
euxassay_014539_05 euxassay_014539_06 euxassay_014539_07 euxassay_014539_08 euxassay_014539_09
EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587
euxassay_014539_10 euxassay_014539_11 euxassay_014539_12 euxassay_014539_13 euxassay_014539_14
EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587
euxassay_014539_15 euxassay_014539_16 euxassay_014539_17 euxassay_014539_18 euxassay_014539_19
EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587 EMAGE:18587
euxassay_014539_20 euxassay_014539_21 euxassay_014539_22 euxassay_014539_23 euxassay_014539_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:18587Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
18587_wholemount_strong.wlz
18587_wholemount_moderate.wlz
18587_wholemount_weak.wlz
18587_wholemount_possible.wlz
18587_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:18587_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38741
Entity Detected:B230208H17Rik, RIKEN cDNA B230208H17 gene ( MGI:2442633)
Sequence:sense strand is shown

>T38741
AGTGCTGTATCCACAGGGAGTTCCAGCCCCAGCACACCCCAGCCTGCCCCTCAGCTGTCTCTAGGTGTCT
CCTCCACCTGTCCCTCAGCACCATCTCCTGTACCCTCTTTGGAGGCCATGCCCTCCTCTGTACACTCTTC
AGCCCCAGCCCCAACCCCAGCTCCAGCCCCAGCTCCAGCCCAGCGTCGCAGTATCATCTCTCGGCTGTTT
GGGACCTCACCAGCTGCAGAAGTGACCCCTTCACCTCCAGAGCCAGCTCCAGCTCTCGAAGCTCCAGCAA
GAGTCCAGAATGTTGAGGATTTTGTCCCTGAAGATGGCCTTGACCGAAGCTTCCTGGAAGACACAAGTGT
GCCTAAAGACAAGAAAGTTGGAGCCAAAGGTCCCCAGCAGGATAGTGACAGTGACGATGGGGAGGCCCTA
GGAGGGAACCCAATGGTGGCAGGTTTCCAGGATGATGTGGACATAGAAGACCAGACACATGGCAAATCCC
TGCTGCCCTCGGATCCCATGCCCAGTAAGAACATCAGTCTCTCAAGTGAGGAGGAAGCCGAAGGACTGGC
AGGCCACCCTAGAGTGGCCCCTCAGCAATGCTCAGAGCCTGAGACTAAATGGTCCTCCACCAAGGTCTCA
CATCCACAAAAGAAGGGAGCTCCCACGAGAGGCACGCCACCGTGGTCAGATGGTCTCACCACTGATGACT
CTGAAAGACCCCAGGAAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 161777. Forward Primer - name:161777_F_cDNA_mCG131080.2, sequence:AGTGCTGTATCCACAGGGAGTT; Reverse Primer - name:161777_N_SP6_cDNA_mCG131080.2, sequence:CTTCCTGGGGTCTTTCAGAGT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:18585 same embryo
 EMAGE:18588 same embryo
 EMAGE:18583 same embryo
 EMAGE:18584 same embryo
 EMAGE:18586 same embryo
 EurExpress:euxassay_014539 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS