EMAGE mouse gene expression spatial database

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EMAGE:18926

LOC627872 (LOC627872)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_014217. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_014217_01	euxassay_014217_02	euxassay_014217_03	euxassay_014217_04

euxassay_014217_05	euxassay_014217_06	euxassay_014217_07	euxassay_014217_08	euxassay_014217_09

euxassay_014217_10	euxassay_014217_11	euxassay_014217_12	euxassay_014217_13	euxassay_014217_14

euxassay_014217_15	euxassay_014217_16	euxassay_014217_17	euxassay_014217_18	euxassay_014217_19

euxassay_014217_20	euxassay_014217_21	euxassay_014217_22	euxassay_014217_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

18926_wholemount_moderate.wlz

18926_wholemount_weak.wlz

18926_wholemount_possible.wlz

18926_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:18926_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

forebrain

weak

regional

weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

hindbrain

weak

regional

weak expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19

midbrain

weak

regional

weak expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17

facial vii ganglion

moderate

regional

moderate expression: see section 03 04 05 19 20

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 06 07 17 18

trigeminal v ganglion

moderate

regional

moderate expression: see section 02 03 04 05 06 07 08 16 17 18 19 20 21

vagus x ganglion

moderate

regional

moderate expression: see section 08 16

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 06 07 weak expression: see section 17 18

trigeminal v nerve

moderate

regional

moderate expression: see section 08

spinal cord

weak

regional

weak expression: see section 08 09 10 11 12 13 14 15 16

dorsal root ganglion

moderate

regional

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 weak expression: see section 18

neural retina

weak

regional

weak expression: see section 01 02 22 23

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T40347
Entity Detected:	LOC627872, (LOC627872)
Sequence:	sense strand is shown >T40347 CCTGTACAAGCAAGAGAAGGCTGTGGGGGACAAGGTGTACTGGAAATGCCGCCAGCACTCAGAGCTAAGC TGCCGGGGACGGGCCATCACCCGTGGCTTTCGAGTCACAGAGATGCGGGACCACTGTCACCCACCTGAGA AGGAGGGCCTGGACAGGAAAAAGCGCCACAGGGGAAGGCCGCCCAGCTCAGCCCTGCCTGAGGGCGCTGA AGTCCAAGAAGATGAAGTGAGCCTATGGTTGTACCCTGTGGAGCCAGAACCTACTCCTCAGCCAAGCACT GAAACCCCAGAGGAGGAGCAGGGGTACCGGTCCCTGGCACTGCAGAGCCTGCCTCCCAAGAAACGCCCTA CACCAGGAGTGGTACGGTATCGGCCTCTTGAGTTCCTGAAGACTTGCTATGGGGGTACCTTCCTGGTTCA CCAGTCCTTCCTCTACAAGCGGGAAAAGACGGTAGGAGGCAAGGTGTACTGGACCTGCCGGGAACATGCA GTCCATGGCTGCCGTAGCCGAGCCATCACCCAGGGCCAGCGTGTGACAGTGATGCGCAGCCATTGCCACT CACCTGACATAGAAGGCTTGCAGGCCCGGCGACAGCAGGAGAAGACCATAAAGAAGATACAGGCAAGGCG AATTGGGGCTGGGGACTTGGAGGATTGCGATGACATAGAGGACTCACTGCTGCAAGGAGTGGACAGCCTG TTCTACCGAAGAGGGCAGGGCACACTGACTCTCAGTAGGTCCAGGTCCAGAAAACGAGCAAAGAAGCAGC AGGAATCCTCGCAGGAGCCCCCCGAGGAGGACCAGGATGTAGACCCCAGAGGCCCAGAGTTCCTAAAAAC CCCTCTAGGGGGC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 161277. Forward Primer - name:161277_F_cDNA_mCG8069.2, sequence:CCTGTACAAGCAAGAGAAGGCT; Reverse Primer - name:161277_N_SP6_cDNA_mCG8069.2, sequence:GCCCCCTAGAGGGGTTTTTAG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:18927 same embryo
	EurExpress:euxassay_014217 same experiment
	MGI:4824883 same experiment
	Allen Brain Atlas same gene
	BioGPS same gene
	BrainStars same gene
	ViBrism same gene
Data Source