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EMAGE:19041

Pdcd4 programmed cell death 4 ( MGI:107490)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041
"Pseudo-wholemount" of euxassay_015855. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_015855_01 euxassay_015855_02 euxassay_015855_03 euxassay_015855_04
EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041
euxassay_015855_05 euxassay_015855_06 euxassay_015855_07 euxassay_015855_08 euxassay_015855_09
EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041
euxassay_015855_10 euxassay_015855_11 euxassay_015855_12 euxassay_015855_13 euxassay_015855_14
EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041 EMAGE:19041
euxassay_015855_15 euxassay_015855_16 euxassay_015855_17 euxassay_015855_18 euxassay_015855_19
EMAGE:19041 EMAGE:19041
euxassay_015855_20 euxassay_015855_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19041Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19041_wholemount_strong.wlz
19041_wholemount_moderate.wlz
19041_wholemount_weak.wlz
19041_wholemount_possible.wlz
19041_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19041_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T40521
Entity Detected:Pdcd4, programmed cell death 4 ( MGI:107490)
Sequence:sense strand is shown

>T40521
CCTAAACAATTATCAGGCCAGCCAGAGCTATAGAGCAGGTTCTGTCTCAAGAAGCAATGAAACATTTTTG
TTTGGTTTGCACTGTTAGGATTGAACACAAGGCCTAGTGAGGTTTAAACAGGAAACCTAAAAGAAGTTTC
AAAAGACACAATAAATGCACTCCCACTAAAGAATCAACAGTGTTTCACATGTTTTATTTTGCTGTACATT
CTTGTAGAACCGGGTTCGTTTTTCCAGTTTTGTAGAAAAATAGATGTTCCAGCCACCATTTACTTAACTG
TCTAATATTTAAGACCAATCAATATGTTCCCTGGAAAGATGAAAAAGTCTCATGACTAACTCGTTTTTTT
AAAAATTCTTTAAAACAAAAAGTGTGTGTGTGTGTGTGTGTGTGTTTACTCTCAAAGCACAGCATTTCCA
CAGCAGCAGCCAACATGGGGTTTAGTAGCTTCACTCACCCCTAACTAAAGCTTTGAATAAACCAGTGATT
TTACTACAAAAAACACTGTCCTTGAAAGAAAGGAGCGGCAGTCATACATGAACGTGAAACTTGGAATGAT
CAGGTCCTAAACATGGCACTTAGAAAGTAGCTTATCAGAACACCCACACTTCGGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 164377. Forward Primer - name:164377_F_cDNA_mCG22959.2, sequence:CCTAAACAATTATCAGGCCAGC; Reverse Primer - name:164377_N_SP6_cDNA_mCG22959.2, sequence:ACCGAAGTGTGGGTGTTCTGA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19042 same assay
 EMAGE:19044 same embryo
 EMAGE:19040 same embryo
 EMAGE:19039 same embryo
 EurExpress:euxassay_015855 same experiment
 EMAGE:19043 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS