EMAGE mouse gene expression spatial database

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EMAGE:19236

Acvr1 activin A receptor, type 1 ( MGI:87911)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001869. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001869_01	euxassay_001869_02	euxassay_001869_03	euxassay_001869_04

euxassay_001869_05	euxassay_001869_06	euxassay_001869_07	euxassay_001869_08	euxassay_001869_09

euxassay_001869_10	euxassay_001869_11	euxassay_001869_12	euxassay_001869_13	euxassay_001869_14

euxassay_001869_15	euxassay_001869_16	euxassay_001869_17	euxassay_001869_18	euxassay_001869_19

euxassay_001869_20	euxassay_001869_21	euxassay_001869_22	euxassay_001869_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19236_wholemount_strong.wlz

19236_wholemount_moderate.wlz

19236_wholemount_weak.wlz

19236_wholemount_possible.wlz

19236_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19236_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

vibrissa

strong

regional

strong expression: see section 04 05 06 07 19 20 21

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2531
Entity Detected:	Acvr1, activin A receptor, type 1 ( MGI:87911)
Sequence:	sense strand is shown >T2531 GGATNGTGANTTNCCAGCCACCATTCTATGATGTGGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAA AGTTGTCTGTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCGACATTAACTTCT CTGGCGAAGCTGATGAAAGAGTGCTGGTATCAGAACCCATCCGCAAGACTCACAGCTCTACGTATCAAAA AGACTTTGACCAAAATCGATAATTCCCTAGACAAATTAAAAACTGACTGTTGACCTTGTCACCGGTGTCA AGAAGGAGAGTCAATGCTGTCCTTGTCCAGCTGGGACCTAATGCTGGCCTGACTGGTTGTCAGAACAGAA TCCATCTGACCCCCTTCCCGAAGTGGCTGCTTTGACGGAAGCAGATGTCTCTTCCCAGCCATGTTCCAGG GGGAGACACCAAAACCACCCTAACCTCGCTCAAAAACTGTGACTCGAGCCCTCGATGAACTGTTCACACC ACAAAGACTTAACGGTGGGGCAGGTC
Notes:	The probe template was PCR amplified from IMAGE:1381990 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1381990 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19234 same embryo
	EMAGE:19235 same embryo
	EMAGE:19237 same embryo
	EMAGE:19239 same embryo
	EMAGE:19238 same embryo
	EurExpress:euxassay_001869 same experiment
	MGI:4822963 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source