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EMAGE:19253

Trex1 three prime repair exonuclease 1 ( MGI:1328317)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253
"Pseudo-wholemount" of euxassay_001979. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001979_01 euxassay_001979_02 euxassay_001979_03 euxassay_001979_04
EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253
euxassay_001979_05 euxassay_001979_06 euxassay_001979_07 euxassay_001979_09 euxassay_001979_10
EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253
euxassay_001979_11 euxassay_001979_12 euxassay_001979_13 euxassay_001979_14 euxassay_001979_15
EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253
euxassay_001979_16 euxassay_001979_17 euxassay_001979_18 euxassay_001979_19 euxassay_001979_20
EMAGE:19253 EMAGE:19253 EMAGE:19253 EMAGE:19253
euxassay_001979_21 euxassay_001979_22 euxassay_001979_23 euxassay_001979_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19253Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19253_wholemount_strong.wlz
19253_wholemount_moderate.wlz
19253_wholemount_weak.wlz
19253_wholemount_possible.wlz
19253_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19253_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T3456
Entity Detected:Trex1, three prime repair exonuclease 1 ( MGI:1328317)
Sequence:sense strand is shown

>T3456
TTCCAAANNTACTTCCTCAGCCACACTGNTGCCAGCAGCAGACCCAGCGGAGTGCCTTGTGGCACACAAC
GGTGACCGCTATGACTTTCCTCTGCTCCAGACAGAGCTTGCTAGGCTGAGCACTCCCAGTCCCCTAGATG
GTACCTTCTGTGTGGACAGCATCGCTGCCCTAAAGGCCTTGGAACAAGCTAGCAGCCCCTCAGGGAATGG
TTCGAGGAAAAGCTACAGCCTGGGCAGCATCTACACCCGCCTGTACTGGCAAGCACCGACAGACTCACAT
ACTGCTGAAGGTGATGTTCTAACCCTGCTCAGCATCTGTCAGTGGAAGCCACAGGCCCTACTGCAGTGGG
TGGACGAACATGCCCGGCCCTTTAGCACCGTCAAGCCCATGTACGGCACTCCGGCTACCACTGGAACAAC
CAACCTAAGGCCACATGCTGCCACAGCTACTACACCCCTGGCCACAGCCAATGGAAGTCCCAGCAATGGC
AGGAGCAGGCGACC
Notes:The probe template was PCR amplified from IMAGE:329698 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:329698 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19258 same embryo
 EMAGE:19256 same embryo
 EMAGE:19257 same embryo
 EMAGE:19255 same embryo
 EMAGE:19254 same embryo
 EurExpress:euxassay_001979 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS