EMAGE mouse gene expression spatial database

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EMAGE:19284

2610301B20Rik RIKEN cDNA 2610301B20 gene ( MGI:1914407)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002094. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002094_01	euxassay_002094_02	euxassay_002094_03	euxassay_002094_04

euxassay_002094_05	euxassay_002094_06	euxassay_002094_07	euxassay_002094_08	euxassay_002094_09

euxassay_002094_10	euxassay_002094_11	euxassay_002094_12	euxassay_002094_13	euxassay_002094_14

euxassay_002094_15	euxassay_002094_16	euxassay_002094_17	euxassay_002094_18	euxassay_002094_19

euxassay_002094_20	euxassay_002094_21	euxassay_002094_22	euxassay_002094_23	euxassay_002094_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19284_wholemount_strong.wlz

19284_wholemount_moderate.wlz

19284_wholemount_weak.wlz

19284_wholemount_possible.wlz

19284_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19284_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5485
Entity Detected:	2610301B20Rik, RIKEN cDNA 2610301B20 gene ( MGI:1914407)
Sequence:	sense strand is shown >T5485 GTTCAAGATGGCGAAGGACCTGGACGAACTTCTGGATGACGTCGAGACCAAGTTCTGCAGACTCGACCCC CTGAGGCTGGACCTGGGTGAGCGGCCCAAAGGCGACGGCGGCGGCGGCTCGCACAGCGGCGACCGGAACG GAGCCCAGGAGAAAGAAACTCTCAGATCAACAGAAACATTTAAAAAAGAAGATGATCTTGACAGTCTTAT TAATGAAATATTCGAGGAGCCTGACTTTGACAGAAAATCTTTTCAAAAATTTAAATCTAAATCTTCAAGT AACACATGTGTCAGAGCTCCCATGCAAGGCGTCAGTAAAAGTTGCAGTCCAGTGTATCTCAGTGGAAGCG CCATTCCATGTGGGATTGGAACAAATACTTCACAGAGAGCATGTGACCGACTGCGTTGTGTAGCCTGTGA TTTCCGGATAGTGAGCTACAATGACTATATGTGGGACAAGTCATGTGACTACCTGTTCTTCAGAAACAAC ATGCCAGAATTCCACAAACTCAAAACAAAATTGATCGAGAAGAAAGGAGCACGGGCATATGCCTGCCAGT GTAGCTGGAGAACTGTTGAAGAACTCACTGACCTGCAGACAGATCATCAGCTTCGCTGGGTGTGTGGTAA ACACTGAGAGTGCAGACAGCGGCACCTGTGAGAACAAGTTCCGGGTACCAGCTTGGGTACCAGTGCACAG CAGTATTGTGCGCGCTGGGAAAAGGCAACAAATGCTGTGTAACCACACATGTCTGAAGACCAAATGGACT GGAAAAGGCATGCGTACTGTGACACCTTGGCATTCTTCCTTTCGACGTGGACATTTTACTTAGGTTAAAA TATCTGCGTTTGCCAGCCTATCACCTTTTAGGGACTGAAATAGTGACATCCCGTGCAGATTTACAGCTTT TTTATAGCAACTGCCATACTGACTGCTAATGCACTCTAAAATGTTCCTCATATGTCATCGTTGTTAAAGA ATACCCACTGGCATGGCAGAGAGGTCATTGTATATGAGTGTTCATGGCTCTTCCTATTCTGATCTATCAT TGTCTGAGACTATAAGTTGAACATGACAGAAAAGCAGATGACCATTGGTTAACTGAGGAGTTGGCAAGAA TACAGGAACATTGTAACCCTGCCTTTTATGTATCTCATCTTGCCTCACCAACTCAATTCAGTATTATGCA TAATAGTAATAATGATGTTACCAGTTTTAGTGTATTTCCTCCTTTGCTCACTGAAATAGCAAAAGTTGTT AGTTTTCTATTAGCAAACATCTATTTATATATGTTTTTGATGCAACTAAAGTTACTAAAATCCTAAAAAT AAGTCGTTGTTAGACTTTTCAAGTATACTCCATAACTCTAAATGAGCAGCAGTAAGATGACTTTCAGACA ACCTGTGGACTTTCTAATAGTATCAGGTTGGCCCATTCTTTATTGAAGCATAGAGAACCAATGGGTAGCT CTTGGGCTCCTGTGATATCACTGAGATGGGAGGAACTGTATCATACATAGTAACGTTCAAGAAATGCATT GCCTCAGTTTTACCTCCCAGCCCCATAGACATTTCAGGGCTTTTCTAGTCTGCTAGAGTTCTTTTCTGTG TGACCATTTCCTGTGTGTGTATTACTTAAGTGTGTGACACTGGGCACTCTGAAAGGAAGTACATTTTAGC CCAGATATGATCTGCTTGCTTTTCAGTTAACTCCATTCTTGCCACCAAGCAAATCCTCTGAGTGCTAAAA GCTTTTTCCTAGGCTAGGGTCTAGCTTGGCAATAGAGTACTTGCATTGCATGTACAAGACCCTAAATTTA TTCCCAGTGGTACAAAAGAAAAAAGAAAGACAGAGAGGCAAGCTTTTCCTCACCATGACACATTTATGTA CTTAAAAAACTTTAATTGCAGCAAAAGAGATCTCAAAGTGGCTGATGCTCAAGTTTTTGTATTAAGATTA TTTGCAAATTTTATCTTTCAATAAACCAATTTACTCCTCAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5397173 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5397173 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19281 same embryo
	EMAGE:19285 same embryo
	EMAGE:19283 same embryo
	EMAGE:19282 same embryo
	EMAGE:19280 same embryo
	EurExpress:euxassay_002094 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source