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EMAGE:19288

Chchd8 coiled-coil-helix-coiled-coil-helix domain containing 8 ( MGI:1915435)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288
"Pseudo-wholemount" of euxassay_004741. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004741_01 euxassay_004741_02 euxassay_004741_03 euxassay_004741_04
EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288
euxassay_004741_05 euxassay_004741_06 euxassay_004741_07 euxassay_004741_08 euxassay_004741_09
EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288
euxassay_004741_10 euxassay_004741_11 euxassay_004741_12 euxassay_004741_13 euxassay_004741_14
EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288 EMAGE:19288
euxassay_004741_15 euxassay_004741_16 euxassay_004741_17 euxassay_004741_18 euxassay_004741_19
EMAGE:19288 EMAGE:19288 EMAGE:19288
euxassay_004741_20 euxassay_004741_21 euxassay_004741_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19288Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19288_wholemount_strong.wlz
19288_wholemount_moderate.wlz
19288_wholemount_weak.wlz
19288_wholemount_possible.wlz
19288_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19288_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5458
Entity Detected:Chchd8, coiled-coil-helix-coiled-coil-helix domain containing 8 ( MGI:1915435)
Sequence:sense strand is shown

>T5458
TTGCCTACGAACCCCCGCGTCTGGGGCGGAACGCGCTCGCACGCTCTTCTGCACCAGCGGGTTCCTCAAG
ATGTCAACCTCAGTCCCACAAGGCCATAACTGGACCCGCCCTGTGAAGAAGGATGATGATGAGGAAGACC
CAATGGACCAGCTCATCACCCGGTCTGGCTGTGCTGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCA
ACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAGGCA
AGACGGAGGGAGGAGCTGCAGAGGAGGAAAGAGCAAGCCAGTGCTCAACACTGAGACCTTATACCATCTC
ACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAGTAATAGAAGTGG
TGTAAAATCTGGGGACAGTCTTCGGGACAGGATTGACAGCCAGACCCCATGAGGTTGCACATGACGGTCA
CCATGAGCTGATCTATGGTCAGATCACACATATCCTCCACATTCTTGTTCTACCAATATTTGTGTTTACA
ACCACACTCCCTCCACCCTACCTCTCAGTGACTGTGTGCCAAGTACTTTATAAGTACATACGGGTTGCCC
AATCAGGCCTTCATTTTCCAATCACAAATTTAACCACAGAAAGTGTTTCTAAGGCATTGCGTTGGCGATG
TGCAATTCGAAGAGTAACGTGACCTTCCCGTTGCTGAGAGACTCGGGGGACAGGCAGAAATAAAGCAACA
CTCAAAGGAGTGAACTCGGTTTCCGCAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5371531 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5371531 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19286 same embryo
 EMAGE:19287 same embryo
 EMAGE:19289 same embryo
 EurExpress:euxassay_004741 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS