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EMAGE:19385

Cgrrf1 cell growth regulator with ring finger domain 1 ( MGI:1916368)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385
"Pseudo-wholemount" of euxassay_002207. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002207_01 euxassay_002207_02 euxassay_002207_03 euxassay_002207_04
EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385
euxassay_002207_05 euxassay_002207_06 euxassay_002207_07 euxassay_002207_08 euxassay_002207_09
EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385
euxassay_002207_10 euxassay_002207_11 euxassay_002207_12 euxassay_002207_13 euxassay_002207_14
EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385
euxassay_002207_15 euxassay_002207_16 euxassay_002207_17 euxassay_002207_18 euxassay_002207_19
EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385 EMAGE:19385
euxassay_002207_20 euxassay_002207_21 euxassay_002207_22 euxassay_002207_23 euxassay_002207_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19385Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19385_wholemount_strong.wlz
19385_wholemount_moderate.wlz
19385_wholemount_weak.wlz
19385_wholemount_possible.wlz
19385_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19385_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6080
Entity Detected:Cgrrf1, cell growth regulator with ring finger domain 1 ( MGI:1916368)
Sequence:sense strand is shown

>T6080
CCACGCGTCCGGGCCAGCCGGGCTGGGCTGGGCTGAGCCCAGGAGACCCCGATGGCCGCAGTGTTCCTGG
TAACGCTCTATGAATACTCGCCGCTCTTCTACATAGCGGTGGTCTTCACCTGCTTCATCGTCACCACCGG
CCTGGTATTAGGATGGTTTGGTTGGGATGTTCCAGTAATTCTGAGAAATTCAGAAGAAACCCAGTTCAGC
ACAAGAGCGTTCAAGAAACAAATGAGACAAGTGAAGAATCCTTTTGGCTTGGAGATCACTAATTCATCTG
CAGCTTCCCTAGCAAGCATGGCCTTGAGGACAGACTGCCTGGAGGATAGTCGTCTGACGTGCTACTGGGG
ATGCAGTGTGCAGAAGCTCTACGAAGCTCTCCAGAAGCACGCCTACTGCTTCAGGATAAGCACCCCGCAA
GCGTTAGAAGAGGCGCTGTACAGTGACTATCTCCACCGAGAACAGTATTTTATTAAAAAGCACAGCAAAG
AAGAAATATATTGCCAGTTACCAAGTGATACTGAAATTGAAGACTTTGGTCCAGTGCCCAGATCTCGCTA
TCCTTTGGTAGCTCTGTTGACCCTTGCTGATGAGGATGACAGGGAAATTTATGATATTATTTCCATGGTG
TCAGTAATTCATATTCCTGATAAGACTTACAAACTTCCCTGCCGAATATTGTATCAATATTTAATCCTGG
CTCAAGGTCAATTTTATGATCTTAAGCAACTTTTCATGTCTGCAAATAATAGTCCTCCTCCCTCTAACGA
CGAGTCTCCAGAAGACAGAAGTGTGGAGCAGAGCTTGTTGGAGAAGGTGGGACTGGCTGGGAATGACGGG
GACCCAGTGGAGGAGAGCAGCAGGGACTGCGTGGTGTGCCAGAATGGGGGCGTGAACTGGGTGCTCCTGC
CCTGCCGGCACGCCTGCCTGTGCGACAGCTGTGTGCGCTACTTCAAGCAGTGTCCCATGTGCCGGCAGTT
TGTGCAGGAATCCTTTGCACTTTGTGGTCAGAAAGAGCCAGACAAGGACCTACTAGAAACTTCCTGAAGA
TATCACAGCCGGAAAGTGTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACAC
AGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTTCACTTCGTACTTGTACAATACGTGGATGATG
GAAATAAAGTCTTACCACTCAGTGTGGCAAATGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3491666 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3491666 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19388 same embryo
 EMAGE:19386 same embryo
 EMAGE:19387 same embryo
 EMAGE:19384 same embryo
 EurExpress:euxassay_002207 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS