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EMAGE:19605

Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 ( MGI:1914682)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605
"Pseudo-wholemount" of euxassay_005062. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005062_01 euxassay_005062_02 euxassay_005062_03 euxassay_005062_04
EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605
euxassay_005062_05 euxassay_005062_06 euxassay_005062_07 euxassay_005062_08 euxassay_005062_09
EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605
euxassay_005062_10 euxassay_005062_11 euxassay_005062_12 euxassay_005062_13 euxassay_005062_14
EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605 EMAGE:19605
euxassay_005062_15 euxassay_005062_16 euxassay_005062_17 euxassay_005062_18 euxassay_005062_19
EMAGE:19605 EMAGE:19605 EMAGE:19605
euxassay_005062_20 euxassay_005062_21 euxassay_005062_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19605Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19605_wholemount_strong.wlz
19605_wholemount_moderate.wlz
19605_wholemount_weak.wlz
19605_wholemount_possible.wlz
19605_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19605_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7443
Entity Detected:Hoga1, 4-hydroxy-2-oxoglutarate aldolase 1 ( MGI:1914682)
Sequence:sense strand is shown

>T7443
GTCACAGACAGCTGAGGCTCCAGACCTCCCGCAGAAATGCTGGGCCCCCAAATTTGGGCCTCCATGAGGC
AGGGTCTGAGCAGGGGCTTGTCTAGGAATGTGAAGGGCAAGAAGGTAGACATTGCCGGCATCTACCCACC
CGTGACCACCCCATTCACCGCCACCGCAGAGGTAGACTATGGGAAACTGGAAGAGAACCTGAACAGACTG
GCCACCTTCCCCTTTCGAGGCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTTG
AGCGCCTGGAGGTGGTGAGCCGTGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGG
CTGCGAGTCCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATG
GTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAGGTTG
CTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGA
TGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGATGTGACCAGG
ATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCC
TGGCCAGCTATGCTGTGGGAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTG
CCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAG
CCCAACACTGCGGTGACCCGGCGCTTCGGAATACCAGGGCTGAAGAAAACCATGGACTGGTTTGGCTACT
ATGGAGGTCCCTGCCGCGCCCCGTTGCAGGAGCTGAGCCCCACAGAGGAGGAGGCACTGCGCTTGGATTT
CAGCAACAATGGCTGGCTTAAATGACAAGCAGGAGACGCCTGGCCTGAGCTATCTGGGACTTTTGTTCCC
ACAGCCTGAGGAGGAGCAGCAGGGCATTAGGAATTAGGGCTTATTTTTGTCTGTGTTCTCTTGCTGTGAA
GAGACGCCAAGACCATGGCAACTCATAAAAGAAAGTGTTTAAGGGTGGCTGGCTTACAGTTTCAGAGGTT
CAGTCCATCATCATCATGGCAGGGAGCATGGCGGCCTGCAGGCAGTCATGGTGCTGAAGAAGAAGCAGAG
AGTTCTACATCTAGATCTACAGGAAGCAGGAAGAGAAAGCTACTCGGCCTTGCTTGGACTTTTGAAAACC
TCAAAGCCCACCTCCAGTGACACAGCCTCCAACAAGGCCACACCTTCTAATCCTTTCAAATAGTGCCACT
CCCTAAGCATTTATATATGTTAACTTGAGGGGGGGGCATTCTTAATCAAACCACCACATTCCGTCCCAGG
CCTCATAGGCCCTGTAGCCATATTATAATGCAAAATGCATTCAGTCCAAGTTCAAAAGTTTCCGTAGTCT
ATCAGTCTGAAGACTGCTTAAAAGTTTAAAGTGTAAAGTCTCTTCTGAGGCTCACTGTAAAATCAAAAAA
AAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4235003 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4235003 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19603 same embryo
 EMAGE:19604 same embryo
 EurExpress:euxassay_005062 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS