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EMAGE:19670

Txnl1 thioredoxin-like 1 ( MGI:1860078)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670
"Pseudo-wholemount" of euxassay_006139. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006139_01 euxassay_006139_02 euxassay_006139_03 euxassay_006139_04
EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670
euxassay_006139_05 euxassay_006139_06 euxassay_006139_07 euxassay_006139_08 euxassay_006139_09
EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670
euxassay_006139_10 euxassay_006139_11 euxassay_006139_12 euxassay_006139_13 euxassay_006139_14
EMAGE:19670 EMAGE:19670 EMAGE:19670 EMAGE:19670
euxassay_006139_15 euxassay_006139_16 euxassay_006139_17 euxassay_006139_18

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19670Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19670_wholemount_strong.wlz
19670_wholemount_moderate.wlz
19670_wholemount_weak.wlz
19670_wholemount_possible.wlz
19670_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19670_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9672
Entity Detected:Txnl1, thioredoxin-like 1 ( MGI:1860078)
Sequence:sense strand is shown

>T9672
CCTCTCGCTCGCCTCCCAGCCCGCGTCTCCTCCCCCTCCGCTCGCCTGCTCCCTGGCGTGACTCGGCACT
CGCAGCTCCGGGAGGACACGTCGTGGTCGCCGTTCCCGCCCAGGCCCCGGCCTCCTGCAGCCCGTCTCCG
GCCTCTCTCGGGCTCTGTGCTTCAGTTTTGAGGCCGGAAGCGTCGCGGCCGCCCTGCCGGGCTCTCTGTG
AGGATGGTGGGAGTGAAGCCGGTCGGGAGCGATCCAGATTTCCAGCCGGAGCTGAGCGGGGCGGGCTCCA
GACTTGCCGTGGTCAAGTTCACCATGAGAGGGTGTGGACCGTGTCTTCGGATTGCCCCGGCGTTCAGCTC
TATGAGTAATAAGTACCCACAGGCAGTCTTCTTGGAAGTAGATGTGCATCAGTGCCAGGGAACAGCTGCC
ACCAACAACATATCAGCAACACCTACGTTTTTGTTTTTTCGAAACAAAGTGAGAATCGATCAGTATCAAG
GAGCAGATGCTGTGGGACTAGAAGAGAAAATCAAGCAGCACTTAGAAAATGATCCTGGAAGCAATGAGGA
CGCAGACATTCCAAAGGGCTATATGGATTTAATGCCTTTTATTAACAAAGCTGGTTGTGAATGTCTTAAT
GAAAGTGATGAGCACGGCTTTGACAACTGTTTACGAAAAGACATGTCCTTCTTGGAGTCTGACTGTGATG
AGCAGCTCCTTATTACTGTGGCATTCAATCAGCCTGTTAAGCTTTATTCCATGAAGTTTCAAGGACCAGA
TAACGGTCAGGGTCCTAAATATGTAAAAATTTTTATCAACCTACCCCGATCTATGGATTTTGAGGAGGCG
GAAAGGAGTGAGCCAACTCAAGCTCTGGAACTGACAGAAGATGACATTAAAGAAGATGGCATTGTTCCTC
TTCGTTATGTTAAATTTCAGAATGTCAACAGTGTAACTTTATTTGTTCAGTCTAATCAAGGAGAAGAAGA
AACAACGAGAATTTCATATTTTACTTTCATTGGTACTCCAGTCCAGGCAACAAATATGAATGACTTCAAA
CGAGTGGTTGGCAAAAAAGGGGAAAGCCATTAGGGTACAAAGACACTGGAAGACTTACTGCAGTCAGACT
TGCAGCTCCTGGATAATTGCTTGATTCTCTTCGGAAACTGTTAATCTTTTATTTGTTGCCAGTACCAATA
AATCATTGCTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6596299 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6596299 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19671 same embryo
 EMAGE:19669 same embryo
 EurExpress:euxassay_006139 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS