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EMAGE:19777

Zc3h4 zinc finger CCCH-type containing 4 ( MGI:2682314)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777
"Pseudo-wholemount" of euxassay_006291. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006291_01 euxassay_006291_02 euxassay_006291_03 euxassay_006291_04
EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777
euxassay_006291_05 euxassay_006291_06 euxassay_006291_07 euxassay_006291_08 euxassay_006291_09
EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777
euxassay_006291_10 euxassay_006291_11 euxassay_006291_12 euxassay_006291_13 euxassay_006291_14
EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777
euxassay_006291_15 euxassay_006291_16 euxassay_006291_17 euxassay_006291_18 euxassay_006291_19
EMAGE:19777 EMAGE:19777 EMAGE:19777 EMAGE:19777
euxassay_006291_20 euxassay_006291_21 euxassay_006291_22 euxassay_006291_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19777Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19777_wholemount_strong.wlz
19777_wholemount_moderate.wlz
19777_wholemount_weak.wlz
19777_wholemount_possible.wlz
19777_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19777_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8851
Entity Detected:Zc3h4, zinc finger CCCH-type containing 4 ( MGI:2682314)
Sequence:sense strand is shown

>T8851
GCCCGCTCTCCCTCGCTCTCGCTCTGTCTTTTTTTGGGCGCCATGCTGAGGGGAAGGGAAGATGGTGAGT
TGGAAGAAGGTGAACTGGAAGACGACGGGGCTGAGGAGGTCCAGGACCCCCCTGGAGGACAAGAGAGGAG
TCGGAAGGAGAAGGGGGAGAAGCACCACAGCGACTCTGAGGAGGAGAAGTCTCACCGGAGGCTGAAGCGG
AAGCGGAAGAAGGAGCGGGAGAAGGAAAAGAGGCGCTCGAAGAAAAGGCGGAAATCTAAGCACAAACGCC
ATGCTTCCTCCAGCGATGACTTCTCGGACTTCTCAGATGACTCAGATTTCAGCCCCAGTGAGAAGAGTCA
CCGCAAGTACCGGGACTATAGTCCCCCATACGCACCATCCCACCAGCAGTACTCCTCGTCACACAACGCA
CCCCTGCCCAAGAAGTCCTACTCCAAGATGGATAGCAAGGGCTACAGCATGTATGAGGACTACGAGAATG
AGCAGTATGGGGAGTACGAGGGGGATGAAGAGGAGGACATGGGTAAGGAAGACTATGACGACTTCACCAA
AGAACTGAACCAGTACCGGCGTGCCAAGGAGGGCAGCAGCCGGGGCAGAGGTAGCCGAGGCCTGGGCCTC
CAAACACCCGGCAGCGTCCAGGCTCCACAGATCCCAGCACCTCTGGCTCTAACCTACCTGACTTTGAACT
CCTCTCTCGAATCCTCAAGACCGTCAATGTCAATACCCCTGGTCAGAGTGAAAAGCCCAGTGATCCGAGG
GTGCGGAAGACCCCTACTGACCCCAGATTACAGAAGCCAGCAGATCCTGTGGCAGCCTCCCGTGCAGCCA
AGCCCTGTCCCACTGAAGCATCGCCTCCTGCTGCCAGCCCAAGCGGGGATTCATCCCCACCGGCCACGGC
TCCCTATGACCCCCGAGTGCTGGCTGCTGGTGGCTTGGGCCAGGGCAGCAGCAGCGGGCAGAGCAGTGTG
CTGAGTGGTATCAGCTTATATGACCCAAGGACTCCCAATGCAGGTGGCAAAACTGCAGAGCCAGCTTCTG
ACACAAGTGCTCAGCCCAAGGGTCCTGAGGGCAATGGCAAGGGCTCAGCCTCCAAGGCAAAAGAGCCTCC
GTTTGTCCGAAAGTCTGCCCTGGAGCAGCCAGAGACAGGGAAGGCCAGCACAGATGGGGCCACAGCCACG
GACAGATACAATAGCTACAACCGGCCCCGGCCCAAGGCCACAGCAGCCCCCACTGCTGCCTCATCCACCC
CGCCCCCTGAGGGGGCCACACCCCAGCCTGGGGTACACAACCTGCCAGTGCCCACTCTCTTTGGGACTGT
AAAGCCGGCCCCCAAAACAGGCACAGGGAGCCCCTTTGCTGGCAACAGCCCTGCCCGTGAGGGTGAGCAG
GATGCAGGATCCCTGAAGGACGTTTTTAAAGGCTTTGACCCCACAGCCTCCCCCTTCTGCCAGTAGTGTC
ACTGGGGGCCAGTGCTCCCTCCACTCCACCACCCTCCCAGGGTGACATTTAAGGGCAGCAACCAGAGTTA
CAGGCGGGAGGTGGGGCAGGTGGGCAGGGTGTTCTTTCTTCACATTTTTCTTCCCTTTTTTCCCCATTTT
TAAATAGTACTTTCTTTGAGTCATAAATTGTATCTAACCATCTTGGGTTCTGGTCAGTGCTGCAGGCTCC
TGGGCTCCCCTCTGCCCAGTGAGCAACTTATACCCTGCACTGGATAGTGGCAAGTACCCAGCCTGGGACT
TCCCTGGAACTGAGGGATGCATAGCTGTCTGGGGAAGCACTGACGGCCACTCACTCACCCTGTGCTGCTG
CAAGTTTGACAGAACCACATCACATCGTGGAGAAGCTGGTGCAGGAGTTCCTAGAGCCCCAGGGTCAACT
GTCCTCTCTAGCATGCAGCCTGTGACAGCTTGCTTCAGGACAAAGCAACAGTGAAGTGAGAAAATGTCAA
CAGGAGAGAAAGGGCCCGGCAACCCTCTGGCCCTAACCTGCTCTAGCCTGTACATCCCACATCCTCCGTC
CGTCTGTCCATCCAGGGTTTGTCTGTCCTGAAAGTGACACCCACCAGCTCTGCGGGAGACTCTTGGTAGA
CAGACCTGTGGGGTAGCAGGCCTGGCAGGAGTGGGACAGCCCCTTGAAGCATTCTCCCTCAGTATTACCT
ACCCTGTGCCACTGGCCTGACCCTCGAGACAGCTCAAGGATCCGTGGTGTGGCCACCTGCCAGACCCCCA
AGGAGAGAGGCCAAGAGTGGCCCTGGCACAGTGTGTCTGCTAGCTGCTTCCACACCCCTTAGCCATGTTA
TCTGTAGAGTACCGGATAGTGTTTGCTTTTTCCTCCCAAGCTGACAGAAGCTGGGCATCAGTGATCTGTT
GTGTTGGATTAATAGGTCCTTCCCCAAATGGGACCTGAGGAAATAGCAGGTGTCCAGCTGATGTGTTGGG
CCTTTTCTAGGAAAGGGACCAAGCCCCTTCAAGTGGGGAGGCCCAGAGTTACCTGCCATATCCCACATAG
TGGAGGCGTTCCCGCAGCCGCCACCACTAGCCTCCTTAGGGCTGGCCTTGTCCAAAGAATGGGGGTGGGA
GCGCCAAGGGGCAGAGACTCTCCTTGACCCTCTCCCTAAGGTTGGATCAGGGAACTGGGTAAGACCTGCA
GAAGGTTTCTCTGAGTCACTCACCAGGCCCTACAAGTCCGCTTTCTTGCAGGCTGCCTCTTTTATATTGG
GTCTCTTGGCCCAACTGCTTCCTTCTTGTTAATAAGGAGACCTGACGCACACAGCCAGTGGATTCCCCTC
CACCTCGGGAGGGGACAGGCTCCCACATCCCATCCCACCCTCCACACCCCAAAGAGAAATCCCTTCAAAA
CAGTTTGGGGCCTGTAGCCAGGGTGGGAGGGGCTTGTGCCCCACAGCCTCACAACCCTTGGGGTCAGTGC
ACCAAGATCAAGTTGGTTGGTTTGTCTTGTGTTTTTTATTTTGTTTTATTTTCTTAAACAATCATCAATG
AGATTTGTCTTTGGGCCCCAGCCTTGGCCACGAGGCCCTGAGGCCAAGGCTGGGGCCCTGGTGAGCATAG
GATAGGTAGGGTGAGTACAGTGTGGCAGTGTTTGGGTCCCGACACCCCTTTGAAAACCCCCTTTTTGTAA
AAGCCAGGCTTGGTAGTGGGCACCTGTCATCCCAGCACTCAGGAGGCAGGGTCAGGAGGATTACAGGTTC
AAAGCCAGTCTGGTCTATATTAGAAAAAGAAAACTGTCCTTTTGCTAAAGAAAAATTAAATGAATTTTTA
AGGCTGAAATCTGTGGGTAAGATGGAGTCTGGAGCTTTCCTCTTGGAACAGTTAACCGAAGACCCTCATG
GGCAAGGACATCCGCTTGACTCCCCACTCACCATCAGGCCACACTTTTAAAGAAAAATTGTTCTCTAACC
AGGATTGTAACAAATGTGTAAATAGTATTTCTGAGTTGAAAGTCGATGGTGCAAATATGTATATAACGTA
CTGTATTTTTACAATGATCGTCGCATGGCTCTCCCACCCCCTTTTGTACTCAGTATCTGTCTTCCAGAAA
CCTCACCTGCCTTCTCTCTCATGTGGTCTCTTAATCCAGTAATTGTATTACTGCCATTAAAGGATGCAGT
TATTTTAAACAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6412890 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6412890 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19774 same embryo
 EMAGE:19776 same embryo
 EMAGE:19772 same embryo
 EMAGE:19773 same embryo
 EMAGE:19775 same embryo
 EurExpress:euxassay_006291 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS