EMAGE mouse gene expression spatial database

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EMAGE:20001

Slc12a7 solute carrier family 12, member 7 ( MGI:1342283)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009467. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009467_01	euxassay_009467_02	euxassay_009467_03	euxassay_009467_04

euxassay_009467_05	euxassay_009467_06	euxassay_009467_07	euxassay_009467_08	euxassay_009467_09

euxassay_009467_10	euxassay_009467_11	euxassay_009467_12	euxassay_009467_13	euxassay_009467_14

euxassay_009467_15	euxassay_009467_16	euxassay_009467_17	euxassay_009467_18	euxassay_009467_19

euxassay_009467_20	euxassay_009467_21	euxassay_009467_22	euxassay_009467_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

20001_wholemount_strong.wlz

20001_wholemount_moderate.wlz

20001_wholemount_weak.wlz

20001_wholemount_possible.wlz

20001_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:20001_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

not examined

regional

not examined expression: see section 04 05

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 05 06 07 08 17 18 19 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T37022
Entity Detected:	Slc12a7, solute carrier family 12, member 7 ( MGI:1342283)
Sequence:	sense strand is shown >T37022 GTAGGAACGGCTCCTTACATTGTTGTCGGCAATGGTAGGTATACCCAGGAGATCTGGGGCAGCTCTTCCT ATTACTGGCAGGGCCTCGCCTCCTGACACTAGGATCACCTTTCTGCAGATGGCTGTCCAGCATTTTGTGG CAGTTATATTTTACTTCCACCAGAGAACAGTACAAAGGCGCCTCTGTACTTTTCATGAACCTGACAGATA AACCAGAACTCGTGAACAAGCACACAGTTCCTTGGGTCTAGAATGTCACTGAGTTGTTCCCCATTGGCTT CTTTGTTCCTTTGAGTATCCTTGCTGTGCTTTCTGTACAGTAAGCACACTGAGGACTGTCCACCCTCACC TCCTCATTCTCTCCCCCACCCTCCTCAGACATGGGCCAGGGTACCACTGGGAAATTGAGATAGTGTTTAC AGGGTAGGAGTGGGTCACCATTGGAACCAGTGGTACCTGACAGCTGTGTTCCCATCTGAGTCGATGCCCT AGGAGCTCCTGCAGAGAGAACCTTTGTTCTGCAGGGCTATCTGCAGCTAGCCTGCTTTCTCTTCTCATGG GAACTCAGCCACTTTATTTCATACGCACCGAGCTGGGAACTTCAAGCAGGTGACTACG
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 74507. Forward Primer - name:074507_F_cDNA_Slc12a7, sequence:GTAGGAACGGCTCCTTACATTG; Reverse Primer - name:074507_N_SP6_cDNA_Slc12a7, sequence:CGTAGTCACCTGCTTGAAGTT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:20000 same embryo
	EMAGE:20004 same embryo
	EMAGE:20003 same embryo
	EMAGE:19999 same embryo
	EMAGE:20002 same embryo
	EurExpress:euxassay_009467 same experiment
	MGI:4828097 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source