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EMAGE:20016

Fam151a family with sequence simliarity 151, member A ( MGI:2657115)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016
"Pseudo-wholemount" of euxassay_001992. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001992_01 euxassay_001992_02 euxassay_001992_03 euxassay_001992_04
EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016
euxassay_001992_05 euxassay_001992_06 euxassay_001992_07 euxassay_001992_08 euxassay_001992_09
EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016
euxassay_001992_10 euxassay_001992_11 euxassay_001992_12 euxassay_001992_13 euxassay_001992_14
EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016 EMAGE:20016
euxassay_001992_15 euxassay_001992_16 euxassay_001992_17 euxassay_001992_18 euxassay_001992_19
EMAGE:20016 EMAGE:20016
euxassay_001992_20 euxassay_001992_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20016Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20016_wholemount_strong.wlz
20016_wholemount_moderate.wlz
20016_wholemount_weak.wlz
20016_wholemount_possible.wlz
20016_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20016_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1168
Entity Detected:Fam151a, family with sequence simliarity 151, member A ( MGI:2657115)
Sequence:sense strand is shown

>T1168
TCCTCGAGNCTGTTGGCCTACTGGAGATCTCAGCTGCAGGGAGTCTCAGATGACTGTGAGATCCTGAAGG
GAGCTCTCTTGAGTGAGGGTCACAATGTCCTGCAAGAAATGGTGCTCCAGCAGCCAGGCCAAGTGGATCC
TTGCTGGCAGTGTCACTGTGACACTGGTGTTGGCCATTTCATTGATCCTAGGCCTAACCCTGCATCAGGG
CACCCAACCAGGCTGTGAGAACGATGCAATTTGCGGTCCTGATGCTGACATGCTGGACTACCTGATGGGC
ATGGGCCAGATCAGCCACCGGGATGGCTTGCTGGTCACCTGGTACCACGCAGCCAACAGCAAGAAAGAGA
TGGCAGCTGCCCTAAACAGCGATGTCATGGTCTTAGAAGCCGATGTCACCGTAGAAGGGTTCAACACAGC
CAATGAGACCAAGGTGCCCATTATGGCCCACCCTCCAGCCATCTACAGTGACAACACCCTGCAGGAGTGG
CTAGAAGCTGTACTGGCCTCATCTCAGAAGGGCATCAAACTGGACTTCAAGAGTCTCAAGGCTGTAGGCC
CCTCC
Notes:The probe template was PCR amplified from IMAGE:2158938 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2158938 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20013 same embryo
 EMAGE:20012 same embryo
 EMAGE:20011 same embryo
 EMAGE:20014 same embryo
 EMAGE:20015 same embryo
 EurExpress:euxassay_001992 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS