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EMAGE:20021

Sec24c Sec24 related gene family, member C (S. cerevisiae) ( MGI:1919746)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021
"Pseudo-wholemount" of euxassay_002018. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002018_01 euxassay_002018_02 euxassay_002018_03 euxassay_002018_04
EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021
euxassay_002018_05 euxassay_002018_06 euxassay_002018_07 euxassay_002018_08 euxassay_002018_09
EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021
euxassay_002018_10 euxassay_002018_11 euxassay_002018_12 euxassay_002018_13 euxassay_002018_14
EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021 EMAGE:20021
euxassay_002018_15 euxassay_002018_16 euxassay_002018_17 euxassay_002018_18 euxassay_002018_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20021Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20021_wholemount_strong.wlz
20021_wholemount_moderate.wlz
20021_wholemount_weak.wlz
20021_wholemount_possible.wlz
20021_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20021_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T3441
Entity Detected:Sec24c, Sec24 related gene family, member C (S. cerevisiae) ( MGI:1919746)
Sequence:sense strand is shown

>T3441
CGAGGTCTCATCGATAGCTTACGGGCACAGAGAATGCGGTACATGAAGCTTATCGTGGTCAAGCAGGAAG
ACAAGCTGGAGATGCTGTTCAAGCACTTCCTGGTGGAAGACAAGAGCCTAAGTGGAGGTGCATCCTATGT
GGACTTTCTCTGTCATATGCACAAGGAGATCCGGCAGCTACTGAGCTAAAGCAAGTGGGTAAATGGCATA
GGGTCCCAGGCCAGCTTCCAGGAAGAACCCCAGGATGACAGAGAAATTGGGACAGTTCCATATCGTATAA
GTCATGTAAGCTGACCTCAGTTGACTTCTTTTGGGGGGAGGGCGAGATATAAGGAGACACCTTCTTTCTG
GGCTCAAATACACTACCACTCTGTCATGTCCTGCTGATCGAAGGTGCCTCAGGCCCCTTACTCTACCCTT
TCTCCTGCTAATCCTCTTGTAATGAATGTAGTTTCTCAGTTCACTGTATATGATTCGGTGTTGGGGGTTT
GGAGGCAGCTGGGCCCTGGCAACAGTGTGTCCCTTTGGATGAGCCTCCAA
Notes:The probe template was PCR amplified from IMAGE:3026020 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:3026020 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20018 same embryo
 EMAGE:20017 same embryo
 EMAGE:20020 same embryo
 EMAGE:20019 same embryo
 EurExpress:euxassay_002018 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS