Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:20244

Nfx1 nuclear transcription factor, X-box binding 1 ( MGI:1921414)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244
"Pseudo-wholemount" of euxassay_012305. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012305_01 euxassay_012305_02 euxassay_012305_03 euxassay_012305_04
EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244
euxassay_012305_05 euxassay_012305_06 euxassay_012305_07 euxassay_012305_08 euxassay_012305_09
EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244
euxassay_012305_10 euxassay_012305_11 euxassay_012305_12 euxassay_012305_13 euxassay_012305_14
EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244
euxassay_012305_15 euxassay_012305_16 euxassay_012305_17 euxassay_012305_18 euxassay_012305_19
EMAGE:20244 EMAGE:20244 EMAGE:20244 EMAGE:20244
euxassay_012305_20 euxassay_012305_21 euxassay_012305_22 euxassay_012305_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20244Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20244_wholemount_strong.wlz
20244_wholemount_moderate.wlz
20244_wholemount_weak.wlz
20244_wholemount_possible.wlz
20244_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20244_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30471
Entity Detected:Nfx1, nuclear transcription factor, X-box binding 1 ( MGI:1921414)
Sequence:sense strand is shown

>T30471
GGGAAGTAGAAGGGGCCAGACCACGGCCAGGCAGGAACCCACCAAAACAGGAGAGTCAGCGGCATATAAA
TGCAGGGCCCAAAACCAACATGCCCCCCATTCCAAAGGATAATCTTAGAGAAAGACCAACGAAGTCAGCC
TGTGACACTGGGAATTTGGCAGTTGTCAGCAAGTCTTCGAGAAGGGTTAACCAAGAGAAAACTGCTGTAA
GGAGACAGGATCCCCAAGTGCTATCTCCTTTTCCCAGAGGCAAACAGAACCATATGCTGAAGAATGTGGA
AACACATACAGGTTCCCTGATTGAGCAGCTAACTACAGAAAAATACGAGTGTATGGTATGCTGTGAGTTG
GTTCAGGTCACAGCCCCGGTGTGGAGCTGTCAGAGCTGTTTTCATGTCTTTCATCTGAACTGCATCAAGA
AGTGGGCACGCTCTCCAGCATCGCATGCAGATGGCCAGAGTGGTTGGAGGTGCCCTGCTTGTCAGAATGT
TTCTGCACATGTTCCCAATACCTATACTTGTTTCTGTGGCAAAGTAAAGAATCCTGAATGGAGCAGAAAT
GAAATTCCACATAGTTGTGGTGAGGTTTGTAGAAAGAAACAGCCTGGCCAGGACTGTCCACATTCCTGTA
ACCTTCTCTGCCATCCTGGACCCTGCCCACCCTGCCCTGCTTTTACAACTAAAACATGTGAATGTGGACG
GACCAGGCACACGGTTCGCTGTGGTCAGCCTGTCTCAGTCCACTGTTCTAATGCATGTGAGAATATCTTG
AACTGTGGTCAGCACCACTGTGCTGAGCTGTGCCATGGGGGTCAATGCCAGCCTTGTCGGATCATACTGA
ACCAGGTGTGCTACTGTGGCAGCACCTCCCGAGATGTGTTGTGTGGAACCGATGTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:30052746), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 58690. Forward Primer - name:058690_F_IRAV107_c10_Nfx1, sequence:GGGAAGTAGAAGGGGCCA; Reverse Primer - name:058690_R_SP6_IRAV107_c10_Nfx1, sequence:CCACATCGGTTCCACACA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20243 same embryo
 EMAGE:20242 same embryo
 EMAGE:20245 same embryo
 EMAGE:20241 same embryo
 EurExpress:euxassay_012305 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS