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EMAGE:20461

Esr2 estrogen receptor 2 (beta) ( MGI:109392)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461
"Pseudo-wholemount" of euxassay_012702. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012702_01 euxassay_012702_02 euxassay_012702_03 euxassay_012702_04
EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461
euxassay_012702_05 euxassay_012702_06 euxassay_012702_07 euxassay_012702_08 euxassay_012702_09
EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461
euxassay_012702_10 euxassay_012702_11 euxassay_012702_12 euxassay_012702_13 euxassay_012702_14
EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461 EMAGE:20461
euxassay_012702_15 euxassay_012702_16 euxassay_012702_17 euxassay_012702_18 euxassay_012702_19
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euxassay_012702_20 euxassay_012702_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20461Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20461_wholemount_strong.wlz
20461_wholemount_moderate.wlz
20461_wholemount_weak.wlz
20461_wholemount_possible.wlz
20461_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20461_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38107
Entity Detected:Esr2, estrogen receptor 2 (beta) ( MGI:109392)
Sequence:sense strand is shown

>T38107
TCGCAAGTGTTACGAAGTAGGAATGGTCAAGTGTGGATCCAGGAGAGAAAGGTGTGGGTACCGAATAGTA
CGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACAC
CCCGGGTGAAGGAGCTACTGCTGAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGA
GCCACCCAATGTGCTAGTGAGCCGTCCCAGCATGCCCTTCACCGAGGCCTCCATGATGATGTCCCTCACG
AAGCTGGCTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCA
GCCTGTTGGACCAAGTCCGCCTCTTGGAAAGCTGCTGGATGGAGGTGCTGATGGTGGGGCTGATGTGGCG
CTCCATCGACCACCCCGGCAAGCTCATCTTTGCTCCAGACCTCGTTCTGGACAGGGATGAGGGGAAGTGC
GTGGAAGGGATTCTGGAAATCTTTGACATGCTCCTGGCGACGACGGCACGGTTCCGTGAGTTAAAACTGC
AGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAACTCCAGTATGTACCCCTTGGCTACCGC
AAGCCAGGAAGCAGAGAGTAGCCGGAAGCTGACACACCTATTGAACGCAGTGACAGATGCCCTGGTCTGG
GTGATTTCGAAGAGTGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCTTT
CTCATGTCAGGCACATCAGTAACAAGGGCATGGAACATCTGCTCAGCATGAAGTGCAAAAATGTGGTCCC
GGTGTACGACCTGCTGCTGGAGATGCTGAATGCTCACAC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 104357. Forward Primer - name:104357_F_cDNA_Esr2, sequence:TCGCAAGTGTTACGAAGTAGGA; Reverse Primer - name:104357_N_SP6_cDNA_Esr2, sequence:GTGTGAGCATTCAGCATCTCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20463 same embryo
 EMAGE:20462 same embryo
 EurExpress:euxassay_012702 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS