EMAGE mouse gene expression spatial database

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EMAGE:20472

Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ( MGI:108074)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009280. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009280_01	euxassay_009280_02	euxassay_009280_03	euxassay_009280_04

euxassay_009280_05	euxassay_009280_06	euxassay_009280_07	euxassay_009280_08	euxassay_009280_09

euxassay_009280_10	euxassay_009280_11	euxassay_009280_12	euxassay_009280_13	euxassay_009280_14

euxassay_009280_15	euxassay_009280_16	euxassay_009280_17	euxassay_009280_18	euxassay_009280_19

euxassay_009280_20	euxassay_009280_21	euxassay_009280_22	euxassay_009280_23	euxassay_009280_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

20472_wholemount_strong.wlz

20472_wholemount_moderate.wlz

20472_wholemount_weak.wlz

20472_wholemount_possible.wlz

20472_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:20472_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1179
Entity Detected:	Sptlc2, serine palmitoyltransferase, long chain base subunit 2 ( MGI:108074)
Sequence:	sense strand is shown >T1179 CCTCGAGCCTGTTGGCCTACTGGTTTCCGGTTTCGGAGAGGTGGGTGCGGTGCGGAGCGGGAGTTGGCTC CGCCGCCACCTCCAGAGCCTGTCCTGCTGCCGGGTGCTGCCGGGAGGATGCGGCCGGAGCCCGGAGGCTG CTGCTGCCGCCGCCCGATGCGGGCGAACGGCTGCGTCAAGAACGGGGAAGTGAGGAACGGGTACTTGAGG AGCAGCACCGCCACCGTCGCGGCTGCCGGCCAGATTCATCATGTAACAGAAAATGGAGGACTGTACAAAA GACCGTTTAATGAAGCTTTTGAAGAAACACCCATGCTGGTTGCTGTGCTCACATATGTGGGCTATGGCGT ACTCACCCTCTTTGGATATCTTCGAGATTTCTTGAGGCATTGGAGAATTGAAAAGTGCCACCATGCAACA GAAAGAGAAGAACAAAAGGACTTTGTGTCCTTGTATCAGGATTTTGAAAACTTCTATACAAGGAACCTCT ACATGAGAATCAGAGACAACTGGAATCGACCTATCTGTAGTGTGCCTGGAGCCAAGGTGGATATCATGG
Notes:	The probe template was PCR amplified from IMAGE:2159441 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2159441 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:20471 same embryo
	EMAGE:20475 same embryo
	EMAGE:20470 same embryo
	EMAGE:20473 same embryo
	EMAGE:20474 same embryo
	EurExpress:euxassay_009280 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source