EMAGE mouse gene expression spatial database

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EMAGE:20534

Cbll1 Casitas B-lineage lymphoma-like 1 ( MGI:2144842)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_012773. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_012773_01	euxassay_012773_02	euxassay_012773_03	euxassay_012773_04

euxassay_012773_05	euxassay_012773_06	euxassay_012773_07	euxassay_012773_08	euxassay_012773_09

euxassay_012773_10	euxassay_012773_11	euxassay_012773_12	euxassay_012773_13	euxassay_012773_14

euxassay_012773_15	euxassay_012773_16	euxassay_012773_17	euxassay_012773_18	euxassay_012773_19

euxassay_012773_20

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

20534_wholemount_strong.wlz

20534_wholemount_moderate.wlz

20534_wholemount_weak.wlz

20534_wholemount_possible.wlz

20534_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:20534_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

heart ventricle

strong

spotted

strong expression: see section 06 07 08 09 10 11 12 13 14 15 16

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T38248
Entity Detected:	Cbll1, Casitas B-lineage lymphoma-like 1 ( MGI:2144842)
Sequence:	sense strand is shown >T38248 TGCACACGAGGTTCTCTCTTTATGTGTAGCATTGTTCAAGGATGCAAGAGAACATATCTGTCTCAGAGAG ACTTACAAGCTCATATCAACCATCGCCATATGAGAGCTGGAAAGCCCGTTACCCGTGCTTCACTTGAGAA TGTTCATCCTCCTATTGCCCCCCCACCAACTGACATCCCCGATCGGTTCATAATGCCACCAGACAAGCAT CATATGAGCCATATTCCTCCAAAGCAGCACATCATGATGCCACCGCCTCCTCTGCAGCATGTGCCACATG AGCACTATAATCAGCCACATGAGGATATTCGTGCTCCTCCGGCAGAATTGTCCATGGCTCCACCTCCACC TCGTTCGGTCAGTCAGGAAACCTTTCGTATTTCAACAAGAAAACACAGCAATTTAATAACGGTCCCTATT CAGGATGACTCCAGTTCAGGTGCTAGAGAACCACCACCTCCTGCCCCAGCACCTGCTCATCACCATCCTG AATATCAGGGTCAGCCCGTGGTATCTCACCCTCATCATATTATGCCTCCACAGCAACATTACGCACCACC CCCACCTCCTCCACCACCAATAAGCCATCCAATGCCACACCCTCCCCAGGCTGCAGGTACTCCTCACTTG GTATATAGCCAAGCTCCACCTCCACCAATGACCTCTGCTCCACCCCCAATAACCCCTCCCCCTGGACATA TTATTGCCCAGATGCCACCTTATATGAATCATCCTCCTCCAGGACCCCCTCCACCTCAGCATGGTGGTCC ACCTGTAACTGCACCCCCTCCTCACCATTACAATCCTAA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 145766. Forward Primer - name:145766_F_cDNA_Cbll1, sequence:TGCACACGAGGTTCTCTCTTTA; Reverse Primer - name:145766_N_SP6_cDNA_Cbll1, sequence:TTAGGATTGTAATGGTGAGGAGG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:20532 same embryo
	EMAGE:20531 same embryo
	EMAGE:20533 same embryo
	EurExpress:euxassay_012773 same experiment
	MGI:4823653 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source