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EMAGE:20658

Sec23ip Sec23 interacting protein ( MGI:2450915)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658
"Pseudo-wholemount" of euxassay_013985. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013985_01 euxassay_013985_02 euxassay_013985_03 euxassay_013985_04
EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658
euxassay_013985_05 euxassay_013985_06 euxassay_013985_07 euxassay_013985_08 euxassay_013985_09
EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658
euxassay_013985_10 euxassay_013985_11 euxassay_013985_12 euxassay_013985_13 euxassay_013985_14
EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658 EMAGE:20658
euxassay_013985_15 euxassay_013985_16 euxassay_013985_17 euxassay_013985_18 euxassay_013985_19
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euxassay_013985_20 euxassay_013985_21 euxassay_013985_22 euxassay_013985_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20658Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20658_wholemount_strong.wlz
20658_wholemount_moderate.wlz
20658_wholemount_weak.wlz
20658_wholemount_possible.wlz
20658_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20658_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39447
Entity Detected:Sec23ip, Sec23 interacting protein ( MGI:2450915)
Sequence:sense strand is shown

>T39447
CTTCTTCAGTGCCAGATGAGTGGGGGACGACCCAAGACGGACAGACAAGGCCAAGAGTTGTAAAACGCGG
GATTGACGACAGCCTCGATGAAATTCCTGATGGGGAGATGCCTCAGGTTGACCACTTGGTGTTCATGGTG
CACGGCATCGGGCCCGTGTGTGACCTGCGCTTTAGAAGTATTATCGAATGTGGTAGGTGCAAGCCCATTC
TCCTTTGTAGACGACTCCAAGTCCAGAACATCAAGAAAATTACCTTGCCAAGTATCGGTCGGTTCCGTCA
CTTTACCAATGAGACTCTGCTAGATGTTTTATTTTACAACAGCCCTACCTACTGCCAGGCAATTGTGGAA
AAGGTGGAAGTGGAGATAAATCGGCTACATTCACTCTTTATGAGTCGGAACCCAAACTTCAAAGGAAAGG
TCTCCGTTGCTGGTCACAGTTTAGGTTCTTTGATACTGTTTGACATATTGTCTAATCAAAGGGATATGTG
TGTCTCTAAGTCTCCGGGATCTGTGGCTGTTTCTAATGGAGTTATAAAGCATTCACAGTTTCAGGAAAAG
CTGATATCTGAAGAGTCAAAGCTGATGTCAGATGAATCATGTGACCTTGATGTTGAGGA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 80763. Forward Primer - name:080763_F_cDNA_Sec23ip, sequence:CTTCTTCAGTGCCAGATGAGTG; Reverse Primer - name:080763_N_SP6_cDNA_Sec23ip, sequence:TCCTCAACATCAAGGTCACAT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20660 same embryo
 EMAGE:20656 same embryo
 EMAGE:20659 same embryo
 EMAGE:20655 same embryo
 EMAGE:20657 same embryo
 EurExpress:euxassay_013985 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS