Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:21007

Rorb RAR-related orphan receptor beta ( MGI:1343464)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007
"Pseudo-wholemount" of euxassay_017914. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017914_01 euxassay_017914_02 euxassay_017914_03 euxassay_017914_04
EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007
euxassay_017914_05 euxassay_017914_06 euxassay_017914_07 euxassay_017914_08 euxassay_017914_09
EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007
euxassay_017914_10 euxassay_017914_11 euxassay_017914_12 euxassay_017914_13 euxassay_017914_14
EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007 EMAGE:21007
euxassay_017914_15 euxassay_017914_16 euxassay_017914_17 euxassay_017914_18 euxassay_017914_19
EMAGE:21007
euxassay_017914_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21007Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21007_wholemount_strong.wlz
21007_wholemount_moderate.wlz
21007_wholemount_weak.wlz
21007_wholemount_possible.wlz
21007_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21007_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50982
Entity Detected:Rorb, RAR-related orphan receptor beta ( MGI:1343464)
Sequence:sense strand is shown

>T50982
GCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCAT
GGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAGTCCAGGGAGGCTCTGTGGCAGCAGTG
TGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAG
CTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGGTTGCTTGGAAGTGGTTTTAGTGAGAATGTGTC
GTGCCTTCAACCCATTAAACAACACTGTTCTGTTTGAAGGAAAATATGGAGGAATGCAAATGTTCAAAGC
CTTAGGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACT
GAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAGACCGAGCCTGGCTGATCGAACCAA
GAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGA
TGATGAGACCCTGGCAAAGTTAATAGCCAAGATACCAACTATCACGGCAGTCTGCAACTTGCATGGGGAG
AAGCTGCAGGTATTTAAGCAGTCTCATCCAGACATAGTGAATACACTGTTTCCTCCATTGTACAAGGAGC
TCTTTAATCCTGACTGTGCTGCGGTCTGCAAATGAAGGGGACGAGAACTCTCAGAGTCATGGAATGCATC
GCCGTTAAGACAAAAGCAATGTGTTCATGGGGACTTAAGGAAAATGTCACTACTGCAACATTAGGAATGT
CCTGCACTTAATAGAAATATTTTTCACCGCTACAGTTTGAAGAATGTAAATATGCACCTGAGTGGGGCTC
TTTTGTTTGTTCGTTTGTTGTTTGTTTGTTTTTGAAATGATCATAAATATACAAATATAGGACACTGGGT
GTTATCTTTTTTAATTTTATTCGGGTATGTTTTGGAGACAACTG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:GCACAGAACATCATTAAGTCCC; Reverse Primer - name:unspecified, sequence:CAGTTGTCTCCAAAACATACCC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_017914 same experiment
 EMAGE:21006 same embryo
 EMAGE:21008 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS