EMAGE mouse gene expression spatial database

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EMAGE:21054

Ankrd6 ankyrin repeat domain 6 ( MGI:2154278)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007140. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007140_01	euxassay_007140_02	euxassay_007140_03	euxassay_007140_04

euxassay_007140_05	euxassay_007140_06	euxassay_007140_07	euxassay_007140_08	euxassay_007140_09

euxassay_007140_10	euxassay_007140_11	euxassay_007140_12	euxassay_007140_13	euxassay_007140_14

euxassay_007140_15	euxassay_007140_16	euxassay_007140_17	euxassay_007140_18	euxassay_007140_19

euxassay_007140_20	euxassay_007140_21	euxassay_007140_22	euxassay_007140_23	euxassay_007140_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21054_wholemount_strong.wlz

21054_wholemount_moderate.wlz

21054_wholemount_weak.wlz

21054_wholemount_possible.wlz

21054_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21054_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

strong

regional

strong expression: see section 1 2 3 4 5

submandibular gland primordium

moderate

regional

moderate expression: see section 7 8 weak expression: see section 7 8 9 0 6

medulla oblongata basal plate mantle layer

strong

regional

strong expression: see section 7 8 9 5 6 moderate expression: see section 4

pons mantle layer

strong

regional

strong expression: see section 6 7 6 7

facial vii ganglion

moderate

regional

moderate expression: see section 4 5 6 9 0 1

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 6 7 7 8

trigeminal v ganglion

moderate

regional

moderate expression: see section 2 3 4 5 6 7 8 7 8 9 0 1 2

trigeminal v nerve

moderate

regional

moderate expression: see section 9 0 6 7

ventral grey horn

strong

regional

strong expression: see section 9 0 1 3 4

cervico-thoracic ganglion

weak

regional

weak expression: see section 9 0 5

cervical ganglion

weak

regional

weak expression: see section 8 9 6

thoracic ganglion

weak

regional

weak expression: see section 2 3

naris

strong

regional

strong expression: see section 2 3 4 5 6 7

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 8 9 0 1 2 4 5 6 7 8 9

nasal cavity respiratory epithelium

strong

regional

strong expression: see section 2 3 6

mandible

weak

regional

weak expression: see section 4 5 6 7 8 9 0 8 9 0 1

lower jaw incisor

strong

regional

strong expression: see section 1 2 6 7

lower jaw molar

weak

regional

weak expression: see section 6 0

maxilla

weak

regional

weak expression: see section 5 6 7 8 9 0 9 0 1

upper jaw incisor

strong

regional

strong expression: see section 1 2 5 6 7

upper jaw molar

weak

regional

weak expression: see section 6 0

metanephros

moderate

regional

moderate expression: see section 6 7 8 9 6 7 8 9

orbito-sphenoid

moderate

regional

moderate expression: see section 1 2 3 4 5 1 2 3

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9139
Entity Detected:	Ankrd6, ankyrin repeat domain 6 ( MGI:2154278)
Sequence:	sense strand is shown >T9139 CGAGGTCGGGAAGAACCCTCCATTGTGAATCCATTGTGGTCTGAGACTGGACGGAAGGTTCGGCCAGCCT GTGTGATTAGAACTGCGTCTTGGGAGTGCCTTTCCTGGATGTGGACAGAGACTCTTGACAGGGTTTGAAG TGAAAATGAGAACTACTGCTGAACACTTGATGCCTAGGTTGTAGCCTGTGTAACACTTCCTGTCACGGGG TGGTGGGAGGCCAGTGGAAGAGAGACTTCCATACAAGAATCTTATTCTGGAGAGCGGCCTATGGACTTTC CCACGGATGAGTCCTGCAGCTCTTGAGAGCATCCAGGAGGACCTGAAGATGGAGTAGTGAGAAAGGCATC CCTCAGGATTCCGAGCACCTTTCGCTGTGGACTCCAGCCCCACCCGAGGCTGCATGTGGAGCTGAGGAAA CTGACCCACCGCTTGCTTTCCTGGGAGCCCCTTTCTCTCCTAATTCATGAGCCAGCAGGATGCGGTCGCT GCGCTTTCAGAACGCCTGCTCATAGCTGCGTACAAAGGCCAAACAGAGAATGTGGTTCAGCTCATCAACA AGGGTGCCAAGGTAGCCGTTACCAAGCATGGCCGGACCCCCTTGCACCTCGCTGCCAATAAGGGTCATCT TTCTGTGGTGCAGATTTTGCTGAAGGCTGGCTGTGACCTCGATGTGCAAGATGATGGGGACCAGACAGCC TTGCACCGGGCCACTGTGGTGGGAAACACCGAGATCCTCACAGCGCTTATCCGGGAGGGGTGTGCCCTGG ACAGACAGGACAAGGATGGGAATACAGCCCTGCATGAAGCCGCCTGGCACGGATTCAGCCAGTCAGCCAA GCTGCTCGTTAAAGCCGGAGCCAATGTGCTTGCCAGAAACAAGGCAGGGAACACAGCTCTGCACCTGGCC TGCCAGAATAGTCACTCCCAGAGCACTCGCATCCTCCTGCTGGGCGGCTCCCGGGCTGACCTCAAAAACA ACGCAGGGGACACCTGTCTGCACGTGGCTGCGCGGTATAACCACTTGTCCGTCGTCAGACTCCTCCTCAA TGCTTTCTGCTCTGTCCATGAAAAGAACCAGGCTGGAGACACGGCCCTCCATGTGGCTGCTGCCCTAAAT CACAAGAAGGTAGTTAAAGTCCTGCTGGAAGCTGGTGCTGACACAACCATTGTGAACAATGCAGGCCAGA CCCCGCTGGAGACTGCCCGCTACCACAATAATCCTGAAGTCGCACTACTCCTCACCAAGGCTCCCCAGAT CTTGCGCTTCAGTCGTGGGCGAAGCCTGAGGAAAAGGAGAGAGAGGCTCAAGGAAGAGAGGAGGGCCCAG TCTGTGCCCCGAGATGAGGTGGCACAGAGCAAGGGAAGTGTCTCAGCAGGAGATACCCCCAGCAGTGAAC AAGCAGTACCCCAAAAAGAGGAAGCTAGAAGAGATTGTCCACCAGCTTCCCAGGAGCCAAGAAAGGATGA GAGGAGGAGAAAGTCGAGGCCAGAGGTGTCAGCGTTATCTGACCCCACCCCAGCCGCAGACCAACAGCCT GGACACCAAAAGAACCTGCACAGTCATCACCACCCCAAAAAGAAGAGCAGACATCGGTGTTGGTCCCCAC CTCCACCCCACGGGTTCAGGGCGTACCAGCTATACACGCTGTACCGGGGCGAGGATGGAAAAGTGATGCA GGCACCAATAAAAGGTTGTCGCTGTGAACCTCTAATCAACAAGCTGGAGAACCAGTTGGAGGCGACTGTG GAGGAAATCAGAGCTGAGTTAGGCTCGGTGCAGGATAAAGTGAACGCGAAGCTGGGCCAGATGGAGAGCA AAACCCAGCACCAAATGTGCGTTTTGGACAAACTGATGGTGGAACGGCTGTCCGCGGAGAGAACAGAATG CATGAATCGCCTGCAACAGCATGCAGCTGCTGAGAAGCAGGAGGGAGAGAAACGTCAGATGTCTTTGGTA GATGAACTAAAAGCCTGGTGCATGTTGAAGATCCAGAGTCTGGAGCTAAGACTCTCTGGAGAGTCTCGGA CCTTCAGAGCTAAATCCACACCACCTCCGTCTGACTCCACTCCAGCTGTAGACCAACCAGTGGTAGCTGC AGGGCCAGGAGCAGCTTCCGACAGCTCCTCTCAGGTTGTGAGGCCCAAGGATAAGGCGCTCAATGCCTCG GCTGCCCACAGCCACCAGCAGGAGCTGCCTCCCTCTGACTGTACAGGGTCTGGGTTAAGGAAGATCAAGG CCCCGGGTGCTTCCAGGTGTGATCAGCAGACTGGATCCTGTGTCAACCGAGGCACTCAGACCAAGAAGTC TGGGAGAAGTGGGCAGACCAAGCATCGAGGCCAGCAGCCCACTGCCAGCAGCCCCAGTGGGCAGCAGCCA TCAGCAGCAAGCAGTGATGTGCGAGACGCCTCACAAGCCCTGGAGCTAACTCAGTATTTTTTTGAGGCCG TTTCTGCACAGATGGAAAAGTGGTATGAACGGAAAATTGAAGAAGCACGGAGCCAAGCAAGTCAGAAAGC TCAGCAGGATGAGGCCACATTGAAGGAACACATCAGAAGTCTGGAGGAGGAGCTTGCCAGGCTGCGGACA AAGGTGCAGAAGTAAAAGCCAGACCCTCAGCTGGACCCAACAGGGTTTCCGGCTTGATAACAGCCAAGTA ACGGTGTCCCAGGAGTTGGTTGTCACGCCCAAGGTGGACTTGCCTTTTAGAAAGTCACGAATGTGTTGCG GACACATATTTCCTGTGCTCTGAAATTACAAGGCCTTCACTGGTTAAAATGAATCCTGGCAATATGTTCA CAAAAAGCAAGCTGCACCCAGATGAGGTGTGTACCCAAGTCTGCGATTCAGTGACATGAACTATGTCGGC AGCAAAGCAGATTACTCTGCGAGCCCAGTAGTCATTCACAGCTGCTGTGACTAGACAGTCCTTCTAACGG AGCTGGGACGCGGATGCCGGAAGCCCCTTTTCTCCCATGTGACTCAAGATGCTCATCTTTTAAAGGGGTG AAAAGCGCTCAGGTTTTGAGGAAATACATTGTAATGATCTCAGTGTCCAGTATGTCTTAAAGTAATGTTA AGGGTCATGTAAAGAAGGAGTAATTGCTGACTGTCAAACTCGAAAAGTTTAAAATATTGGTCAGTTACTG TGGTTTTAGCCAAATAACTGAGCAGACTAATGGAAAAAATCCACCAAACAACTCCAGCTAGTTACCTTAG CTTGATTGCCTTTCTAACGTCAAGACTTTTGCTGGTTTGTAAATAAGGCAGAATCATGAAAGTTTAATTT TGAGTTGACTCCTCACTGAAGAACACCAAGCCATCAGAAGGCTTTACTTGTTCGCGGAGTAAGATGTAAC AGACTGAGGTGGTGACGATATCTGGGTTGGGACCTAGGATTTGTCCTCGGATCCTTTGGAACACAGAACA TGGATTATGTCCGTCTCCATGATCCACATACACATAGGAACTTCTGTTTCTCTAAGCCTAAGGACCTCAT AAATCCTGTCCATGAATTGTGACTAAAATGCTGTTCATTGAGCCAAAGAGAAGTGACCTTTGTGAAATAG TATGCATTTATCCCTTTGTCAAGCCAAGTTCTTCCTTTTTCTTATAGTGACACTCCATGGATGTAGACAT TCCTGGAAACATACAGGGTAGATATATGAGTACAGAATCTAGTGAGGCCAGTTATTTCATGGGACTGACC CGTCCTCAGCCTCTTGGGAGGTGCAGATTTTTCCCATTCTCCTTCACTGGAGTCCTGTCCTCAGCTCACT TGCCCCATCCCTGCTATGACACTCCCTGGACAAAATGTCACTGGACCTGCCTAATACTAAGTAAGAGATG AAACCCCGAGTTCAGCAAGTTATGCTCCAAGCAGGAGTTATTTTCACTATTAGAATACTTATTACCTCAA GATACCCTTGACAAGAAATGCAGACATCAACTGTAACTGAACATCAAATCTAGACCACAGACTACCTTGG TGGCAGTACTTTGATGCTATACCTCCTACCCATCAGAAGCAGGCAGCTTATCACTGTGAATGGATGTTTT TGTCAAGTCATTAAGCATAAAGCCAGGCTATTGAATAAGGCCAGTCAGCCCCTTACCCACAGGGTTGACT TCTAAGGAAGTGGTGGTTGGCTTGTTTTGGAAGGCTCTACTGTGTACTCTAGACTGTCTCAGCCACCTGA GTTCTGGGATTAAAGGAGTGAGCATGGCTAATCCTGTGTTGTTTGTAACACCCGTCTTAGGTTTGTTGCA ATTGTAAAGCACTGAAGATCAGCTGTGTCTTTTCCCCTTGTGCTATGTGCAAAAACAAGCAAATATCCCA GCTGTACTTTTACAGATAACTGTTTATATCACATACTCTCACATAGATCATGCTTCAAACTGAGGCCTAG GAAGCATCAACAGCTGTGGAGAAACATGTTATAAAACAGTAATGTTGTATATTATCAATGTCCTTTTTAA AAACAAGTAATTGTTAGCACAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6825961 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6825961 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_007140 same experiment
	EMAGE:21055 same embryo
	EMAGE:21056 same embryo
	EMAGE:21057 same embryo
	EMAGE:21058 same embryo
	EMAGE:21059 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source