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EMAGE:21081

1110012J17Rik RIKEN cDNA 1110012J17 gene ( MGI:1915867)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081
"Pseudo-wholemount" of euxassay_013715. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013715_01 euxassay_013715_02 euxassay_013715_03 euxassay_013715_04
EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081
euxassay_013715_05 euxassay_013715_06 euxassay_013715_07 euxassay_013715_08 euxassay_013715_09
EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081
euxassay_013715_10 euxassay_013715_11 euxassay_013715_12 euxassay_013715_13 euxassay_013715_14
EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081
euxassay_013715_15 euxassay_013715_16 euxassay_013715_17 euxassay_013715_18 euxassay_013715_19
EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081 EMAGE:21081
euxassay_013715_20 euxassay_013715_21 euxassay_013715_22 euxassay_013715_23 euxassay_013715_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21081Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21081_wholemount_strong.wlz
21081_wholemount_moderate.wlz
21081_wholemount_weak.wlz
21081_wholemount_possible.wlz
21081_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21081_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
upper arm muscle
strong strong
regionalstrong expression: see section 1 2 3 4 5 6 1 2 3 4
upper leg muscle
strong strong
regionalstrong expression: see section 1 2 3 4 5 6 7 8 1 moderate expression: see section 9 0 2 3 4
diaphragm
strong strong
regionalstrong expression: see section 1 2 3 4 5 6 7 8 0 1 2 3 4
forearm rest of mesenchyme
strong strong
regionalstrong expression: see section 1 2 4
hand
strong strong
regionalstrong expression: see section 1 2
foot
strong strong
regionalstrong expression: see section 1 2 3 1 2 moderate expression: see section 0
lower leg rest of mesenchyme
strong strong
regionalstrong expression: see section 1 2 3 moderate expression: see section 2 3 4
vertebral axis musculature
strong strong
regionalstrong expression: see section 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4
brain
strong strong
regionalstrong expression: see section 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1
vibrissa
strong strong
regionalstrong expression: see section 6 7 8 2 3
facial vii ganglion
strong strong
regionalstrong expression: see section 4 5 7 0 1 2
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 6 7 8 9
trigeminal v ganglion
strong strong
regionalstrong expression: see section 3 4 5 6 7 8 9 8 9 0 1 2 3
vagus x ganglion
strong strong
regionalstrong expression: see section 8 8
vestibulocochlear viii ganglion
strong strong
regionalstrong expression: see section 3 4 5 6 7 8 7 8 9 0 1
spinal cord
strong strong
regionalstrong expression: see section 8 9 0 1 2 3 4 5 6 7
dorsal root ganglion
strong strong
regionalstrong expression: see section 7 8 9 0 1 6 7 8 9
cornea epithelium
strong strong
regionalstrong expression: see section 4 3 4
retina
strong strong
regionalstrong expression: see section 2 3 4 3 4
anterior naris epithelium
strong strong
regionalstrong expression: see section 7
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 8 9 0 1 2 3 5 6 7 8 9 0
vomeronasal organ
strong strong
regionalstrong expression: see section 2 3 5 6
stomach
strong strong
regionalstrong expression: see section 2 3 4 5 6 7 8 9 0 1
rectum
strong strong
regionalstrong expression: see section 3
midgut
strong strong
regionalstrong expression: see section 9 0 1 2 3 4 5 6 7 8 9 0
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 2 3 7
lower jaw molar
strong strong
regionalstrong expression: see section 7 0
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 2 3 7
upper jaw molar
strong strong
regionalstrong expression: see section 7 0
kidney calyx
strong strong
regionalstrong expression: see section 8 9 0 8 9 0 1
left lung
strong strong
regionalstrong expression: see section 4 5 6 7 8 9 0 1 2 3 4
right lung
strong strong
regionalstrong expression: see section 4 5 6 7 8 9 0 1 2 3 4
tail mesenchyme
strong strong
regionalstrong expression: see section 0 1 2 3
axial skeleton tail region
strong strong
regionalstrong expression: see section 2 3 4 5 6 7 8 9 0 1 2 3
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9468
Entity Detected:1110012J17Rik, RIKEN cDNA 1110012J17 gene ( MGI:1915867)
Sequence:sense strand is shown

>T9468
AAGAGAAGAGGCAGTCGGGAAATGTACAAAGAGAAGAAACTTGTTAACCAGAATGGTGGAGTGGAACGTC
CTGGGAACTGCAGGTCGGCCACCAAAACCCAAAGGAAGCTGGCACCGAGGCGCAAGGATGACAGTGCGGA
TTTGAAGTGTCAGCTTCAGTTTGTCAAAGAGGAAGCTTCCCTGATGCGCAAAAAGATGGCCAAGTTGGGG
CGGGAGAAGGACGAGTTGGAGCAGGAACTGCAGAAGTATAAGTCCCTCTATGGTGATGTGGACAGTCCCC
TCCCAACAGGGGAGGCTGGTGGTCCCCCCAGCACCAGGGAGGCAGAGCTGAAACTGCGGCTGAAGTTGGT
GGAGGAGGAAGCCAGCATCTTGGGCAGGAAGATCGTGGAGCTGGAGGTGGAAAACCGTGGCCTCAAAGCA
GAGATGGAAGACATACGGGTTCAGCATGAACGCGAGGGAACAGGCAGGGACCACGTGCCAAGCACTCCTA
CCTCACCCTTCGGAGACTCAATGGAGTCCTCCACGGAGCTCCGCCGGCACCTGCAGTTTGTGGAAGAAGA
GGCTGAGCTGCTGAGGAGATCCATCTCTGAGATTGAAGATCACAACCGGCAGTTGACCCACGAGCTGAGC
AAGTTCAAGTTTGAGCCTCACCAGGAGTCAGGGTGGCTTGGGGACGGTGTGTCTAAGGGCCCCGCGGCCA
GCGTTCCCCTGCAGGAGGAGCTGAAGTCAGCCAGGCTACAGATCGATGAGCTGAGCGGGAAGGTACTGAA
GCTGCAGTGTGAGAACCGGCTGCTTCTGTCCAATGCCCAACGGGGTGACCTCGCCGCACATCTGGGGCTG
CGCGCTCCTAGCCCCCGGGACAGTGATGCCGAGAGTGACGCGGGCAAGAAAGAGAGCGATGGGGAGGAGG
GCCGCCTTCCCCAGCCAAAGCGAGAAGGCCCTGTTGGTGGGGAGAGCGACTCGGAGGACATGTTTGAGAA
GACCTCGGGCTTCGGAAGCGGAAAGCCGTCGGAGGCTAGTGAGCCATGCCCGGCAGAGCTGCTAAGGGTC
CGGGAGGATACCGAGTGCCTGGTGACCATAAAGCTGGAGGCTCAGCGGCTTGAGCGGACTGTGGAGCGCC
TCATCTCTGATACAGATGGTTTCATCCACGACTCAGGACTGCGGGGCAATGGATTGGCCTCACCTGGAGT
CCAAGGCGGAGGAGGTGAGGGCAACAGCCCGAGTGAGCCCCACTTGTTGGAGACCATCAATGTGAGGATG
AAGGCTTTCAGGAAAGAGCTGCAGGCCTTCCTGGAGCAGATGTCCCGGATTGTGGATGGTCTCTCGCCCT
TATCCCACCTCACAGAGTCATCCAGCTTCCTCTCCACTGTGACTTCTGTGTCCCGGGACTCCCCCATCGG
GACCCTGGGAAAGGAGTTGGGCCCAGACTTGCAGTCCAAACTGAGAGAGCAGCTGGAATGGCAGCTCAAT
CAGGATCGAGGGGACGAGCGAGAGGGCCTGCGTCTCCGAGCCACTCGGGAGCTGCACCGGCGCGCGGATG
GGGATTCCGGGAGCCACCATGGGCTGGGAGGCCAGAGCTGTTTCAACCTAGAGATGGAGGAGGACCACCT
CTACGCCCTGCGGTGGAAGGAACTGGAGATGCACAGCCTGGCCCTGCAGAACACCCTTCACAAGCGGACG
TGGAGCGACGAGAAGAATCTGCTGCAGCAGGAGCTCAGGTCCCTGAAGCAGAACATCTTCCTCTTCTACG
TCAAGCTCAGGTGGCTGCTGAAACACTGGCGCCAAGGGAAGCAGATGGAGGAGGGAGGAGAGGATCTGGA
GGAGAGCGAACATCCAGAGAATGTGCCTGGGCTTGCTGAGCTTGGAGTCCAGGGGGTTCACCAGACAGAT
GGGATAGACCAGGAGGATGCTGACCAAGGCTGTAGCCTTCCCATGGGAGAGCATGCCCCACACTCCCTGG
TACAGATCAGCGAACACGGATCACGGCTACAGAGTTCAGACGGGGGACCACTTAACAAACAGGTGGTGGA
AAACCAGCAGCTCTTCAGGGCCCTCAAGGCTCTGCTGGAGGACTTCCGTTCGGAGCTGCGCGAAGACGAG
CATGCGCGGCTGCGGCTGCAGCAGCAGTACGCCAGCGACAAGGCTGCGTGGGATGTGGAGTGGGCTGTGC
TCAAGTGCCGCCTGGAACAGCTGGAAGAGAAGACTGAGAAAAGCTTGGGCGAGCTGGACTCCTCTGCTGA
GGGCAAAGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAGAAACTGCTGGCTGACAGCCACAGCCTGGTG
ATGGACCTGCGCTGGCAGATCCATCACCGAGAGAAGAACTGGAACCGGGAGAAGGTGGAGCTGCTGGAGC
GTCTGGACAGCGAGCGGCAGGAGTGGGGGCGACAGAAGGAGGAGCTCCTGTGGCGGGTGGAGCAGTTACA
GAAAGAGAAAAGTCCCCGGAGAAGCGGCAGTTTCCTCTGCAGCCGAAGGGAAGACGACACACGCCCTTAC
CCGCACCAAGGAAGCCTTCACTCCTCCAGACCTGTGTCCATGTGGCCCTGTGAAGACGCCGACTCCATCC
CATTTGAAGACCGGCCGCTCTCCAAACTGAAGGAGTCGGACAGGTGCTCGGCCAGTGAGAACCTGTACTT
GGACGCTTTGTCCCTGGATGATGATCCAGGGGATCCGCCACCCCTCAGGAACTGCCTTGCCGAGGAAGAA
GAAAGTCGCAAGGGCAATCTTCAGAGGGCTGTGTCTGTGTCCTGTATGTCCGAGTTCCAGCGTCTGATGG
ACGTCTCTCCGTTCCTGCCTGAGAAGGGGCTACCTTCCGCCGGCAGCAAGGAGGATGTCACTCCACCCTT
GTCTCCCGACGACTTGAAATACATTGAAGAATTCCATAGCAACGACTGGGATTACGCATCCCCCAGGGCT
GAGGCCGATCGGCCTCCAGACCCCTGGGCAGACAGGACCGAGATGGGGAGGGTGGGGCATGAAGCCACCA
CAGAGCCTTGTCCGGATCCCTCCTGGTATCTGACCACAAGTGTCACGATGACGACAGACACCATGACCAG
TCCGGAGCACTGCCAGAAGCAGCCACTGCGGACCCATGTCCTCACTGAGCAGTCTGGTGTGCACGTGCTG
CACAGCCCGCCTGCCATTCGCCGGGTTGACAGTATAGCATCAGGCGGCGAGGGCAGGAGCCGAGCGGACC
CCGAGGGCCCCTTTCCTATGAGCAGAGCAAGAGGGAACCTGGCAGATGCCAAGGGGGGTCATCCAGAACC
TGTGCTCAACAGGTGGCCTTGCACGCCACCCAGACATCCCCGGGACTGTGTGGAGGGGTCTCTTCGCCCC
CTCGACAGACCTATCTGCCCCTCCCTGGGATTTGCCTCCCCTCTGAACAGCCTAGATATGTCTAAGAACA
TGAGTGATGACATGAAGGAGGTGGCTTTTTCTGTCAGGAATGCCATCTGCGCCGGTCCTGCCGAGCCACA
CGTCAGGGATATGGCCTGCCAGACCAATGGGTCCAGGACAGCAGGGACGCAGACCATCCAGACAATCAGC
GTGGGCCTGCAGACCGAGGCCCTACGTGCCAGCGGCGTCACCAGCAGCCCCCACAAGTGTCTCACGCCAA
AAGCCGGAGGTGGCACCACACCCGTGTCTTCTCCTTCCCGCAGCCTTAGGAGTAGACAGGTGGCCCCTGC
CATTGAGAAGGTGCAGGCCAAGTTTGAACGCACCTGCTGCTCCCCAAAGTACGGTTCTCCCAAACTTCAG
AGAAAGCCCCTCTCAAAAGCTGACCAGCCAAATAGCAGGACCTCACCAGGCATACCCCAGAAAGGGTTCA
GCGAGTCAGCCTGGGCCCGCTCCACCACCACGAGGGAGAGCCCTGTGCACACCACCATCAATGATGGCCT
CTCCAGCCTCTTCAATATCATCGACCACAGTCCCATCGGGGTGCGGGCTGGGAGCCGATCTCGGTCAGCA
GAACCTCGACAGGAGCTGGGTCCAGGCCAGGAAACGGGCACCAGTTCCAGAGGGAGGTCGCCCAGCCCGC
TAGGGGTAGGCTCCGAGACGTTCAGGGAGGAGGGAGGAGAGAGCACGCCAGTGAGACAGGACTTATCTGC
GCCCCCTGGCTACACGCTCACTGAGAATGTGGCCCGGATCCTCAACAAAAAGTTGTTGGAGCATGCCTTA
AAGGAGGAGAGGAAGCAAGCCAGCCATGGCTCCTCAGGTCTCACCAGCGACAGCCACACTGGAGAACCAG
TGCCAGCCGAGCCAGGATCCATGGAGGAACTGCCTTGTTCTGCGCTCGCGCCCTCCCTAGAGCCCTGCTT
TTCCAGGCCAGAGAGACCAGCAAACCGCCGCCTTCCATCCCGTTGGGCCCCACCTTCCCCCACTGCCTCA
CAGTCACAGTCACCCGGACACCCGATGTCCATGGAGGAACACGGTGAGGAGGACCCACCAGAGGAGAAGC
CACACCTGTGACAGGATGCAAGCTTGCGTGGATGATCGCCGGAATAGTTCACTGTAATTTGCATAACCAG
ACCATCACCGCCATCAGCCAACCTCCATCCCAAAGGAAAGATGTAGATCCTTTCTCAAGGTCGAAGGATG
CTTTTAAAAACACACGGCTACTGAATGTTCAACCTGGTAAACTGAGATGTTTCGGGAATGAAACAGTAAA
CGTGCCTGTAATCATTTTTTCATAGCTCAGAAAACTATTTTTGTCTCCCATCTTTTTTACACATGATATA
TTAAACAAAAAAGGTAAATAAGGTATAAATAGATTTAAAGAGTTTTAAAATGTACATTTGAAGAGATTCC
GAGCACCCTTGTTCTCAGTTCTGCCTGCCTGTTGAATTTGCACTGTTCCGTTCTGGTTGGGTTTCTCCAT
GTTGAGTTCGGAGTGTTCTAAGTTAAATTTTATTTTGTCCAGTCTTAATTTTTCAGGAGTCTTTCTTAAC
GCTTTAGACTGTCTTAACTCAGTGAACTTTTTGTAATGATAAGGCCGTGAGGCCAGAAGACGAGAGTGTC
TGTCATCTGAAAGGATGCAGGCCAACCTTGCTGAAAAGGTACGGAGCCCTTCAGATAGACTTAAGACTCT
GCGTGACCCATCTGCCCAGCCTGACCGCACGTCCTCGGGCACCTGTACATACACTGCTCTGTCCCTGCCC
TCACCTGCGTGTGTGTCAGTCTGGTCTACTGTAACTTGTTGTGAAGTTCCTTGTACCGTGTGTACTGTTG
CTGTTGGTCTCTTGTACCAGTAAGACAATGGCTCCATTTTTTTTAATTATTGTTAAAACATTAACTGATG
GTGTACAAATCTCACTTGACATTTTTCTTGTTTAAGGAAAAGCACCATAAAAAAAAAAATAAGGAGGCCA
AACCGAGACAGACAAAGGTGCCTCAGGTCTGCCTGAGACCACGGTGACATGGAAATAAAGTCCTTACAAG
AAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30356997 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30356997 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_013715 same experiment
 EMAGE:21082 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS