Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:21130

Slmo1 slowmo homolog 1 (Drosophila) ( MGI:2442865)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130
"Pseudo-wholemount" of euxassay_001813. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001813_01 euxassay_001813_02 euxassay_001813_03 euxassay_001813_04
EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130
euxassay_001813_05 euxassay_001813_06 euxassay_001813_07 euxassay_001813_08 euxassay_001813_09
EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130
euxassay_001813_10 euxassay_001813_11 euxassay_001813_12 euxassay_001813_13 euxassay_001813_14
EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130 EMAGE:21130
euxassay_001813_15 euxassay_001813_16 euxassay_001813_17 euxassay_001813_18 euxassay_001813_19
EMAGE:21130 EMAGE:21130
euxassay_001813_20 euxassay_001813_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21130Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21130_wholemount_strong.wlz
21130_wholemount_moderate.wlz
21130_wholemount_weak.wlz
21130_wholemount_possible.wlz
21130_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21130_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4111
Entity Detected:Slmo1, slowmo homolog 1 (Drosophila) ( MGI:2442865)
Sequence:sense strand is shown

>T4111
GCGCCCTGGGCCTGCGGCTGCGGCGATGAAGATCTGGAGCTCGGAGCACGTGTTCGGCCATCCCTGGGAC
ACGGTGATCAAGGCGGCCATGCGGAAGTACCCTAACCCGATGAACCCCTGCGTCGTGGGCGTGGATGTGC
TGGAGCGCAGCGTGGATGGCTGTGGGCGCCTGCACAGTCTGCGCCTGCTCAGTACCGAATGGGGGCTGCC
TGGCCTCGTGCGAGCGATTTTGGGAGCCAACAGGACCTTGACGTACATCAAAGAGCGCTCCGTCGTGGAT
CCGGCTGCCAGGAAAATGGAGCTGTGCTCCACCAATATCACGCTCACGAATCTGGTGTCAGTGAATGAGA
GGTTGGTGTACACACCTCATCCAGAGAACCCTGAAAAGACTGTGCTCACTCAAGAAGCCATCATCACTGT
GAAGGGAATTAGCTTGGGGAGCTACCTGGAAAGTCTGATGGCCACCACGATATCCTCCAATGCTAAGAAG
GGGTGGGCTGCCATTGAGTGGATAATTGAACATTCCGAGAGCGCCATAAGCTAACAGGTCTGCCACCCAT
GCCTGGTGACACAAGGGGCAGTCACAGTAACTTCTTAACCCGATGTCTCACCAAAAAGAGTCAAAGAAGA
AAGGAAAGGAAGTGTGGACGAATAAAGAAGACGAGAGGCAAGTGTGGCTGGGGCTCCCGCCAAGTCTGGA
AGAGGTGTCTGCTGGAATCTTTCCTCCCAGTGCAGCATCAGGCCCAGGCGCCAGCTCTGTGAGGCTGTTT
GTGTGAGGCCGTTTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGGCA
CTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTGTTGGTTTTAAGCTTTTATTTGCTTCTGGAAGGAG
TGTTACTTCTGTGTGCTGGCTCTAGTCACTCCACCAAAAGAGAGCTCCCCTTTCCTCATGCCCTGCCAGC
TAAGCTGGGGTAGGTCCCCCAAACCTTTCCCGGGGGGCCTGGCTGCTGTCCTCTGTTCCTGGTAGTCCCA
TGTCCTTATAGTGTCCCACTTGCCTCTGAAGGAGAATAGAAGTTGCTCTCTGGCCCTCAGGGTCCCCATC
ATGCCCTGCATCCAGAGACAGTTTGGGAGCTCTCTGCACAGGCCACTATGGATTCCAGCAGCAACTGGGA
TGTCCATACTCAAGACCGGCCTTGAACTCTGTGTGTGACTGAAGATGCCCTTGAACTCTTCCTTCTGCTT
CCCCATTCCCAAGTCCTGAGAATACAGACTTGGACTGCTAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4459623 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4459623 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_001813 same experiment
 EMAGE:21127 same embryo
 EMAGE:21128 same embryo
 EMAGE:21129 same embryo
 EMAGE:21131 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS