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EMAGE:21150

Tuba3a tubulin, alpha 3A ( MGI:1095406)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150
"Pseudo-wholemount" of euxassay_005442. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005442_01 euxassay_005442_02 euxassay_005442_03 euxassay_005442_04
EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150
euxassay_005442_05 euxassay_005442_06 euxassay_005442_07 euxassay_005442_08 euxassay_005442_09
EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150
euxassay_005442_10 euxassay_005442_11 euxassay_005442_12 euxassay_005442_13 euxassay_005442_14
EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150
euxassay_005442_15 euxassay_005442_16 euxassay_005442_17 euxassay_005442_18 euxassay_005442_19
EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150 EMAGE:21150
euxassay_005442_20 euxassay_005442_21 euxassay_005442_22 euxassay_005442_23 euxassay_005442_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21150Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21150_wholemount_strong.wlz
21150_wholemount_moderate.wlz
21150_wholemount_weak.wlz
21150_wholemount_possible.wlz
21150_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21150_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9809
Entity Detected:Tuba3a, tubulin, alpha 3A ( MGI:1095406)
Sequence:sense strand is shown

>T9809
GAGGACCAGTGGTGAGGAACGGCCGAGGCGGCGTCTGAGCGGGTCTCCGGAGTTCAGCATGCGTGAGTGT
ATCTCTATCCACGTGGGGCAGGCAGGTGTCCAGATCGGCAATGCCTGCTGGGAACTGTACTGCCTTGAAC
ATGGCATTCAGCCTGACGGTCAGATGCCAAGCGACAAAACCATTGGCGGCGGGGACGACTCATTCAACAC
ATTCTTCAGTGAGACTGGAGCCGGCAAGCACGTGCCCAGGGCAGTGTTTGTGGACCTGGAGCCCACTGTG
GTGGATGAGGTGCGCACGGGAACCTACCGGCAGCTTTTTCACCCAGAGCAGCTGATCACTGGAAAGGAAG
ATGCAGCCAATAATTATGCCAGAGGCCACTACACCATCGGCAAAGAGATTGTCGACCTGGTCCTGGATCG
AATCCGAAAGCTGGCCGATCTGTGCACGGGACTGCAGGGCTTCCTCATCTTCCACAGCTTTGGAGGAGGC
ACAGGGTCTGGGTTTGCATCGCTGCTGATGGAGCGGCTTTCAGTGGACTATGGCAAGAAGTCCAAGCTGG
AGTTTGCCATCTACCCAGCCCCCCAGGTTTCTACAGCGGTCGTGGAGCCTTACAACTCCATCCTGACCAC
GCACACCACCCTAGAGCATTCCGACTGTGCTTTCATGGTGGATAACGAAGCCATCTACGACATCTGCCGG
CGCAACCTGGATATTGAACGTCCCACATACACCAACCTCAATCGTCTGATTGGGCAGATTGTGTCGTCCA
TTACAGCCTCCCTGAGGTTTGATGGCGCCCTGAATGTGGACTTAACAGAATTCCAGACCAACCTGGTGCC
ATACCCTCGCATCCACTTCCCACTGGCAACCTACGCCCCGGTCATCTCAGCTGAGAAGGCATACCATGAG
CAGCTGTCAGTGGCAGAGATCACCAATGCTTGCTTCGAGCCAGCCAATCAGATGGTCAAGTGTGACCCTC
GCCACGGCAAATACATGGCCTGCTGCATGTTGTACCGGGGGGATGTGGTTCCCAAAGATGTCAACGCGGC
TATTGCAACCATCAAGACAAAGCGCACCATCCAGTTTGTAGATTGGTGTCCGACTGGATTTAAGGTGGGT
ATTAACTACCAGCCTCCCACTGTGGTCCCTGGGGGAGACCTGGCCAAAGTGCAGCGGGCCGTGTGCATGC
TGAGCAATACCACGGCCATCGCAGAGGCCTGGGCCCGCCTGGACCACAAATTTGACCTCATGTACGCCAA
GCGAGCCTTTGTGCATTGGTACGTGGGAGAAGGCATGGAGGAAGGGGAGTTCTCCGAGGCCCGGGAGGAC
CTGGCAGCGCTGGAGAAGGACTATGAAGAGGTGGGCGTGGATTCCGTGGAAGCAGAGGCAGAAGAAGGGG
AGGAGTACTGAGCGCATGGGTCTGGCTGGCGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGG
ATATATTATTAAAATTTCTAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6771690 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6771690 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_005442 same experiment
 EMAGE:21147 same embryo
 EMAGE:21148 same embryo
 EMAGE:21149 same embryo
 EMAGE:21151 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS