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EMAGE:21195

Hoxd12 homeobox D12 ( MGI:96204)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195
euxassay_008982_01 euxassay_008982_02 euxassay_008982_03 euxassay_008982_04 euxassay_008982_05
EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195
euxassay_008982_06 euxassay_008982_07 euxassay_008982_08 euxassay_008982_09 euxassay_008982_10
EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195
euxassay_008982_11 euxassay_008982_12 euxassay_008982_13 euxassay_008982_14 euxassay_008982_15
EMAGE:21195 EMAGE:21195 EMAGE:21195 EMAGE:21195
euxassay_008982_16 euxassay_008982_17 euxassay_008982_18 euxassay_008982_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21195Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21195_wholemount_strong.wlz
21195_wholemount_moderate.wlz
21195_wholemount_weak.wlz
21195_wholemount_possible.wlz
21195_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21195_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
hand
moderate moderate
regionalmoderate expression: see section 2 3 4
foot
moderate moderate
regionalmoderate expression: see section 2 3 4 5
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35464
Entity Detected:Hoxd12, homeobox D12 ( MGI:96204)
Sequence:sense strand is shown

>T35464
GGCTCGCTTCTGAATTTACAGTCACCGGACTCTTTCTACTTTTCCAACCTGAGAGCCAATGGCAGCCAGT
TGGCCGCGCTTCCCCCCATCTCATACCCTCGCAGCGCGCTGCCCTGGGCTACTACGCCCGCCTCATGCAC
CCCTGCGCAGCCTGCCACCGCCTCTGCCTTTGGAGGCTTCTCTCAGCCTTACTTGACCGGCTCTGGGCCA
ATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCCGAAGACCAGGTCAAGTTCTATACGCCTGATGCGC
CCACCGCATCTGAGGAACGCAGCCGGACTAGGCCGCCCTTCGCCCCCGAGTCTAGTCTGGTTCATTCGGC
TCTCAAAGGCACCAAGTATGACTACGCGGGTGTGGGCCGGACCGCTCCAGGCTCTGCGACCCTGCTCCAG
GGGGCCCCCTGTGCCTCCAGCTTCAAGGAAGACACCAAAGGCCCGCTCAACTTGAACATGGCAGTGCAAG
TGGCCGGGGTGGCCTCTTGCCTGCGATCTTCACT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 73772. Forward Primer - name:073772_F_cDNA_Hoxd12, sequence:GGCTCGCTTCTGAATTTACAGT; Reverse Primer - name:073772_N_SP6_cDNA_Hoxd12, sequence:AGTGAAGATCGCAGGCAAGAG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_008982 same experiment
 EMAGE:21193 same embryo
 EMAGE:21194 same embryo
 EMAGE:21196 same embryo
 EMAGE:21197 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS