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EMAGE:21265

Slfn5 schlafen 5 ( MGI:1329004)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265
"Pseudo-wholemount" of euxassay_001993. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001993_01 euxassay_001993_02 euxassay_001993_03 euxassay_001993_04
EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265
euxassay_001993_05 euxassay_001993_06 euxassay_001993_07 euxassay_001993_08 euxassay_001993_09
EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265
euxassay_001993_10 euxassay_001993_11 euxassay_001993_12 euxassay_001993_13 euxassay_001993_14
EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265 EMAGE:21265
euxassay_001993_15 euxassay_001993_16 euxassay_001993_17 euxassay_001993_18 euxassay_001993_19
EMAGE:21265
euxassay_001993_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21265Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21265_wholemount_strong.wlz
21265_wholemount_moderate.wlz
21265_wholemount_weak.wlz
21265_wholemount_possible.wlz
21265_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21265_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1160
Entity Detected:Slfn5, schlafen 5 ( MGI:1329004)
Sequence:sense strand is shown

>T1160
CCTCGAGCCTGTTGGCCTACTGGGTCTCCACTCTGGACCCAGGACATCAGCTCTGATTCCAGGAGACGGG
GCGCCCTGCGGGCTGCGGAGGACAGACTCCGGCGGTTTCCTGGAGGTTCCAGCAAGACACCATCTCACCA
CTTGCCGCTCTAGAGCTCAACCTTTGGCCAGGAAAAGATTTCAGCTAAAGGCGGAGAAGATGAGTTTCCT
GGAGGATTTGGAACTGAACTTTGCGGAATGTATACAAGATGGAGGAAAAGCGACCCTTGGGGTTAGGCAA
AGGGAGGAAATGGATACCACACACTGCATGAAACAGAACGAAATCATCTCGCAAGCCGTGTGCGCTCTGC
TGAATTCCGGTGGCGGAGTGGTCAGGGTTGAGATTGAGAACGGAGACTATAATTTTGAGAGGGATGGAGT
TGGCTTGAATCTGCCACCATTGTTCAGAAACCATTTAGACGAGATGCTGTATGGAAAGCTCTTTTTAATA
TATGTGAGTTCGTGGGACGTGGCAGCCTCTCACGTGAGGCTCGCTACCCTGTGCTCCAATTTGTACCACA
GATGTGGAA
Notes:The probe template was PCR amplified from IMAGE:2136792 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2136792 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_001993 same experiment
 EMAGE:21266 same embryo
 EMAGE:21267 same embryo
 EMAGE:21268 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS