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EMAGE:21283

A230065H16Rik RIKEN cDNA A230065H16 gene ( MGI:2685744)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283
"Pseudo-wholemount" of euxassay_009381. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_009381_01 euxassay_009381_02 euxassay_009381_03 euxassay_009381_04
EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283
euxassay_009381_05 euxassay_009381_06 euxassay_009381_07 euxassay_009381_08 euxassay_009381_09
EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283
euxassay_009381_10 euxassay_009381_11 euxassay_009381_12 euxassay_009381_13 euxassay_009381_14
EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283
euxassay_009381_15 euxassay_009381_16 euxassay_009381_17 euxassay_009381_18 euxassay_009381_19
EMAGE:21283 EMAGE:21283 EMAGE:21283 EMAGE:21283
euxassay_009381_20 euxassay_009381_21 euxassay_009381_22 euxassay_009381_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21283Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21283_wholemount_strong.wlz
21283_wholemount_moderate.wlz
21283_wholemount_weak.wlz
21283_wholemount_possible.wlz
21283_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21283_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35807
Entity Detected:A230065H16Rik, RIKEN cDNA A230065H16 gene ( MGI:2685744)
Sequence:sense strand is shown

>T35807
CCAGTAGCAATAGCAACAGCATGAGCACCCCACAGCCAGCAGCACCAGAGAGCCCCACTGAGGGCCCCAG
AGGCCCAGCAGGGAAGGCTGCGGTAGGTGTCCGGGAGAAGGGCCCTTGGCTCTGTCAGCGACTGCCCTCT
ATTGTGGTGGAACCCACTGAAGCGGGTGCTGTGGAAAGCGGGGAGCTGCGTTGGCCACCTGAGGGTACAC
AGAGAGGTACCCCTCAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGA
TGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGCTCCAGTAACAGATGCGGGTGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 83906. Forward Primer - name:083906_F_cDNA_A230065H16Rik, sequence:CCAGTAGCAATAGCAACAGCAT; Reverse Primer - name:083906_N_SP6_cDNA_A230065H16Rik, sequence:ACACCCGCATCTGTTACTGGA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_009381 same experiment
 EMAGE:21281 same embryo
 EMAGE:21282 same embryo
 EMAGE:21284 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS