EMAGE mouse gene expression spatial database

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EMAGE:21411

Fdft1 farnesyl diphosphate farnesyl transferase 1 ( MGI:102706)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_000881_01	euxassay_000881_02	euxassay_000881_03	euxassay_000881_04	euxassay_000881_05

euxassay_000881_06	euxassay_000881_07	euxassay_000881_08	euxassay_000881_09	euxassay_000881_10

euxassay_000881_11	euxassay_000881_12	euxassay_000881_13	euxassay_000881_14	euxassay_000881_15

euxassay_000881_16	euxassay_000881_17	euxassay_000881_18	euxassay_000881_19	euxassay_000881_20

euxassay_000881_21	euxassay_000881_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21411_wholemount_strong.wlz

21411_wholemount_moderate.wlz

21411_wholemount_weak.wlz

21411_wholemount_possible.wlz

21411_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21411_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

foregut-midgut junction

moderate

regional

moderate expression: see section 2 3 4 5 6 7 8

vibrissa

moderate

regional

moderate expression: see section 6 7 8 1 2

cerebral cortex

moderate

homogeneous

moderate expression: see section 5 6 7 8 9 1 5 6 7 8 9 0

facial vii ganglion

strong

homogeneous

strong expression: see section 2 5 6 8 9 0

inferior glossopharyngeal ix ganglion

strong

homogeneous

strong expression: see section 5 7 8

superior glossopharyngeal ix ganglion

strong

homogeneous

strong expression: see section 5 7

trigeminal v ganglion

strong

homogeneous

strong expression: see section 2 4 5 6 7 8 7 8 9 0 1

vagus x ganglion

strong

homogeneous

strong expression: see section 4 6 7 8 6

vestibulocochlear viii ganglion cochlear component

strong

homogeneous

strong expression: see section 4 5 8

vestibulocochlear viii ganglion vestibular component

strong

homogeneous

strong expression: see section 4 5 8

dorsal root ganglion

strong

regional

strong expression: see section 5 6 7 8 9 0 1 2 4 6 7 8 9

not examined

regional

not examined expression: see section 4 7 8

stomach

moderate

homogeneous

moderate expression: see section 2 3 5 6 7 8 9 0 1

hindgut

moderate

regional

moderate expression: see section 2 3 4 5 6 7

midgut

moderate

regional

moderate expression: see section 1 2 3 4 5 6 7 8 9

not examined

regional

not examined expression: see section 3 4 5 6 7 8 9

skeleton

moderate

regional

moderate expression: see section 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3857
Entity Detected:	Fdft1, farnesyl diphosphate farnesyl transferase 1 ( MGI:102706)
Sequence:	sense strand is shown >T3857 TGGCCTCGAGCCAGATTCGGCACGAGGGTGGGAGCGGGAGATCCCGACAGGTGAGCCCCGCGCCCAGCAG TCGCAAGGATGGAGTTCGTCAAGTGTCTAGGCCACCCGGAGGAGTTCTATAACCTGCTGCGATTCCGCAT GGGAGGCCGGCGGAATTTTATACCCAAGATGGACCAGGACTCACTCAGCAGCAGCTTGAAGACCTGCTAC AAGTATCTCAATCAGACCAGTCGCAGCTTTGCCGCGGTTATCCAGGCGCTGGATGGGGACATACGGCACG CCATATGTGTGTTCTACCTGGTTCTCCGAGCCCTGGATACAGTGGAGGATGACATGAGCATCAGTGTGGA GAAGAAGATCCCACTGCTGTGTAACTTCCACACTTTCCTCTATGACCCAGAGTGGCGGTTCACTGAGAGC AAGGAGAAGGACCGACAAGTGCTGGAGGACTTCCCCACGATCTCCCTGGAGTTTAGAAATTTGGCTGAGA AATATCAAACAGTGATCGATGACATCTGCCACCGGATGGGGTGTGGGATGGCAGAATTTGTAGACAAG
Notes:	The probe template was PCR amplified from IMAGE:424562 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:424562 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_000881 same experiment
	EMAGE:21412 same assay
	EMAGE:21410 same embryo
	EMAGE:21413 same embryo
	EMAGE:21415 same embryo
	EMAGE:21414 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source