EMAGE mouse gene expression spatial database

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EMAGE:21456

Plekha5 pleckstrin homology domain containing, family A member 5 ( MGI:1923802)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_000853_01	euxassay_000853_02	euxassay_000853_03	euxassay_000853_04	euxassay_000853_05

euxassay_000853_06	euxassay_000853_07	euxassay_000853_08	euxassay_000853_09	euxassay_000853_10

euxassay_000853_11	euxassay_000853_12	euxassay_000853_13	euxassay_000853_14	euxassay_000853_15

euxassay_000853_16	euxassay_000853_17	euxassay_000853_18	euxassay_000853_19

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21456_wholemount_strong.wlz

21456_wholemount_moderate.wlz

21456_wholemount_weak.wlz

21456_wholemount_possible.wlz

21456_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21456_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

medulla oblongata basal plate

moderate

homogeneous

moderate expression: see section 8 4

not examined

homogeneous

not examined expression: see section 4 5 6 7 8 9

cerebellum intraventricular portion mantle layer

moderate

homogeneous

moderate expression: see section 4 5 6 7 8 9 0 4 5 6 7 8 9

facial vii ganglion

strong

homogeneous

strong expression: see section 4 5 8 9

inferior glossopharyngeal ix ganglion

strong

homogeneous

strong expression: see section 7 moderate expression: see section 6 7 weak expression: see section 6

superior glossopharyngeal ix ganglion

strong

homogeneous

strong expression: see section 7 moderate expression: see section 6 7

trigeminal v ganglion

strong

homogeneous

strong expression: see section 4 5 6 7 8 8 9 moderate expression: see section 5 6 7 weak expression: see section 4

vagus x ganglion

strong

homogeneous

strong expression: see section 8 moderate expression: see section 4 weak expression: see section 9 5

vestibulocochlear viii ganglion cochlear component

moderate

homogeneous

moderate expression: see section 7 weak expression: see section 6

vestibulocochlear viii ganglion vestibular component

moderate

homogeneous

moderate expression: see section 7 weak expression: see section 6

dorsal root ganglion

strong

regional

strong expression: see section 7 8 9 0 3 4 5

stomach

moderate

homogeneous

moderate expression: see section 1 2 3 4 5 weak expression: see section 6 7 8 9

kidney calyx

moderate

homogeneous

moderate expression: see section 7 9 5 7

kidney pelvis

moderate

homogeneous

moderate expression: see section 8 6

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3556
Entity Detected:	Plekha5, pleckstrin homology domain containing, family A member 5 ( MGI:1923802)
Sequence:	sense strand is shown >T3556 TGGCCTCGAGCCAGATTCGGACGAGGGTCATGCAGCCCTCAGGAAGAGACGGCCATGACAGAGCATCAGA TGGAAGGCCCCCCTGAGGAAGCAGAGAGTCTTCATGAGGAGGAAGAAACTCTTGCTTCCTGTGAGCCAGC TCCTGAGATTCCTAGGGAGAATCAAACCACAGTGAGAAGTCTGTCCCCGTCTCCTGACTCCTCCACGGCA GCAGATCCGCCCACTCCTCCACAGCTCAGGGAAGGATCGCATTTCATGTGTGTGTAGTCGCAGAACTGCA CTGGCGTCTGTTGAGAGCTCACAGAGCTGAAGCTGTGGACCTCAGTGGTGTAAGAAGATGTACAATATAC CTTAACTCTATGAAATTCATAGTTCGGATGCTGCTGACCACAGAGCATCATTTTATCACCTTTGGAAAAT GTTTATTCCAAACTAGCTTTAATGGCCCGTACGTGCACTCCGTAGTGTCAAGGTCACCGTCCTCCGCAGT CCGCCCACCCGCCCGCTTGCTGCTATTTGAGTTCAGAGCGTATCAGTCAGGTGCTTTC
Notes:	The probe template was PCR amplified from IMAGE:3166916 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:3166916 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_000853 same experiment
	EMAGE:21457 same embryo
	EMAGE:21458 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source