EMAGE mouse gene expression spatial database

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EMAGE:21510

Ramp3 receptor (calcitonin) activity modifying protein 3 ( MGI:1860292)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_001276_01	euxassay_001276_02	euxassay_001276_03	euxassay_001276_04	euxassay_001276_05

euxassay_001276_06	euxassay_001276_07	euxassay_001276_08	euxassay_001276_09	euxassay_001276_10

euxassay_001276_11	euxassay_001276_12	euxassay_001276_13	euxassay_001276_14	euxassay_001276_15

euxassay_001276_16	euxassay_001276_17	euxassay_001276_18	euxassay_001276_19	euxassay_001276_20

euxassay_001276_21	euxassay_001276_22	euxassay_001276_23	euxassay_001276_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21510_wholemount_strong.wlz

21510_wholemount_moderate.wlz

21510_wholemount_weak.wlz

21510_wholemount_possible.wlz

21510_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21510_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thalamus mantle layer

weak

regional

weak expression: see section 7 8 8 9

medulla oblongata basal plate mantle layer

weak

regional

weak expression: see section 8 8 9

pons mantle layer

weak

regional

weak expression: see section 8 8

dorsal grey horn

weak

regional

weak expression: see section 8 9 0 1 2 3 4 5 6 7 8 9

tongue

weak

regional

weak expression: see section 4 5

lower jaw

moderate

regional

moderate expression: see section 2 3 4 1 2 3 4 5 6 8 9 3 4

upper jaw

moderate

regional

moderate expression: see section 6

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5391
Entity Detected:	Ramp3, receptor (calcitonin) activity modifying protein 3 ( MGI:1860292)
Sequence:	sense strand is shown >T5391 CGCTGTTGCTGCAAGCCGGCTGCATCTTAGTTGGCCATGAAGACCCCAGCACAGCGGCTGCACCTTCTTC CACTGTTGTTGCTGCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAG GCTGCCTCGCTGTGGGAAAGCCTTCGCTGACATGATGCAGAAGGTGGCTGTCTGGAAGTGGTGCAACCTG TCGGAGTTCATCGTGTATTATGAAAGCTTCACTAACTGCACCGAGATGGAGACCAACATCATGGGCTGCT ACTGGCCCAACCCGCTGGCCCAGAGCTTCATCACTGGAATCCACAGGCAGTTCTTTTCCAACTGCACGGT GGACAGGACCCACTGGGAAGACCCCCCGGATGAAGTACTCATCCCACTGATCGCGGTTCCTGTCGTGCTG ACTGTGGCTATGGCTGGCCTGGTGGTGTGGCGCAGCAAGCACACTGATCGGCTGCTGTGAGGATCTGCTG GATGGAGGGCCATGCCTGGCAGGCTGGGAGAATGTTGCTCAGAGCTCTGAGAGCTGGCAGACTCGGCTTC TGTCTGGTTTGCTTTGGCCACACCCTACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCT TGCTGTCTAGCCTGCCGCCTGCTGGGGTTCAGATTGTCCATACTTTGCTCTTTCTTGGGCTAGTGGAAGA AAGTGACAAATCCCAAGTTTGTGGACCAGGCATGGAAATCAACTGTTGCTGAGCCCCGCTCCCCAGGCTC GGTTCCCTAGTTTCTAGCCGTTTCTTGGCAGAGTCTTGCTCAGCCTGAACCCCGCCCCAGGTCCTGACCC ATTTTTAGTCCTGACCCTGACCCCTGCTACACTTGGCCAGAGAGGGCAGGCAAGGTCATTTGGAAGATGT GGACGCCCCCCCGCCTTTGTTCAAGAGACTGAGCACATCATTTATCAGACATGAAGGATAGCCTGGGGTC ATTAGGAGCCACGTGTGACCTACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTCACGATTCTGTGTCC AGTGTGGGCTGGAGCTGTGGCTTGTTTAGCCCTTCAAAGACACCTACCCTGCAGGTAGAGCGTGAACCTC CTTCTTGAGGGGTATTCCTGGGAGTGGGGCGCACTGAGTGTGCTCAAGGGTTCTGTCTGCTGATGTCAGT TCTTTTTGATTAAAGTGTCTCCTTACACGTGAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5364778 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5364778 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_001276 same experiment
	EMAGE:21512 same embryo
	EMAGE:21507 same embryo
	EMAGE:21509 same embryo
	EMAGE:21511 same embryo
	EMAGE:21508 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source