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EMAGE:21560

Rbmxl1 RNA binding motif protein, X linked-like-1 ( MGI:1343045)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560
euxassay_002955_01 euxassay_002955_02 euxassay_002955_03 euxassay_002955_04 euxassay_002955_05
EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560
euxassay_002955_06 euxassay_002955_07 euxassay_002955_08 euxassay_002955_09 euxassay_002955_10
EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560
euxassay_002955_11 euxassay_002955_12 euxassay_002955_13 euxassay_002955_14 euxassay_002955_15
EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560 EMAGE:21560
euxassay_002955_16 euxassay_002955_17 euxassay_002955_18 euxassay_002955_19 euxassay_002955_20
EMAGE:21560 EMAGE:21560 EMAGE:21560
euxassay_002955_21 euxassay_002955_22 euxassay_002955_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21560Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21560_wholemount_strong.wlz
21560_wholemount_moderate.wlz
21560_wholemount_weak.wlz
21560_wholemount_possible.wlz
21560_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21560_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1116
Entity Detected:Rbmxl1, RNA binding motif protein, X linked-like-1 ( MGI:1343045)
Sequence:sense strand is shown

>T1116
GTGGCGACCGGCGCGGGAAAGCGGCTTCCTAGTTAGGGAAGCGTTAGCCCCGTGGACCCAGCAGCTGTCA
CCGGTGAGCTACTTGGAAGGCCGATTTGGCGAGCTTGTAGGAGGAGCTTGAGACCTTCACGTCCCCTCCG
ACTCTCAGCTGGAAGGCAAGATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATAC
AGAAACAAATGAGAAAGCCCTTGAAGCAGTATTTGGCAAGTATGGACGAATAGTGGAAATACTTTTGATG
AAAGACCGGGAAACCAACAAATCAAGAGGATTTGCTTTTGTTACCTTCGAAAGCCCAGCAGATGCTAAAG
ATGCAGCTAGAGATATGAATGGAAAGTCCTTGGATGGAAAAGCCATCAAGGTGGAGCAAGCTACCAAACC
ATCTTTTGAAAGTGGCAGGCGTGGACCACCTCCACCTCCAAGAAGCAGGGGCCCTCCCAGAGGTCTCCGA
GGAGG
Notes:The probe template was PCR amplified from IMAGE:2135386 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2135386 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002955 same experiment
 EMAGE:21561 same embryo
 EMAGE:21562 same embryo
 EMAGE:21559 same embryo
 EMAGE:21558 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS