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EMAGE:21758

2410066E13Rik RIKEN cDNA 2410066E13 gene ( MGI:1915485)
TS12 (8.0 dpc)
in situ hybridisation

Data Images
EMAGE:21758 EMAGE:21758
Lateral view posterior ventral detail

Expression pattern clarity: one star
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21758Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21758_wholemount__moderate.wlz
21758_wholemount__weak.wlz
21758_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21758_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
notochord
detected detected
regionalExpression is stronger in the posterior notochord than elsewhere in the embryo.
embryo
detected detected
There is widespread expression in the embryo. Expression levels in the tail bud are stronger than elsewhere in the embryo.
head somite
detected detected
Expression is stronger in the somites than elsewhere in the embryo.
trunk somite
detected detected
Expression is stronger in the somites than elsewhere in the embryo.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1578627
Entity Detected:2410066E13Rik, RIKEN cDNA 2410066E13 gene ( MGI:1915485)
Notes:The 2410066E13Rik probe template used in this study by Tamplin et al, was PCR amplified from IMAGE:4235651 clone using the vector (pCMV-SPORT6) specific primers: pCMV-SPORT6 FWD ACAAAGATCCCAAGCTAGCAG and pCMV-SPORT6 REV TTGACCTCCATAGAAGACACC. T7 polymerase was used to generate antisense probe.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:ICR
Age:8.0 dpc
Theiler Stage:TS12
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Owen J. Tamplin, Brian J. Cox, Janet Rossant.
Principal investigator:Janet Rossant, The Hospital for Sick Children Research Institute, TMDT at MaRS Room 13-305 101 College Street, Toronto, ON, Canada M5G1L7
Submitted by:Owen Tamplin, HHMI/Children's Hospital Boston, Zon Lab, Division of Hematology/Oncology 300 Longwood Avenue, Karp 8, Boston, MA, USA 02115
Experiment type:screen
References:[ doi:10.1016/j.ydbio.2011.10.002] [ PMID:22008794] Tamplin OJ, Cox BJ, Rossant J 2011 Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Dev Biol (360)
Links:MGI:5291785 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE