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EMAGE:236

Foxf1a forkhead box F1a ( MGI:1347470)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:236 EMAGE:236
Figure 5B of Mahlapuu et al., 2001 [PMID:11124112] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright. Figure 5A of Mahlapuu et al., 2001 [PMID:11124112] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Embryo A is in aqueous solution to visualize the general morphology. Embryo B has been clarified in benzylalcohol:benzylacetate to show staining of internal structures and was used for spatial data mapping. Abbreviation in Panel B: Sc, sclerotome. Top arrow points to oral cavity.
Expression Pattern Description
Spatial Annotation:
EMAGE:236Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
236_wholemount_strong_3D_1.wlz
236_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:236_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
oral region cavity
detected detected
foregut
detected detected
Expression in the splanchnic mesenchyme surrounding the foregut.
hindgut
detected detected
midgut
detected detected
left lung rudiment mesenchyme
detected detected
right lung rudiment mesenchyme
detected detected
esophagus
detected detected
trachea mesenchyme
detected detected
trunk mesenchyme
detected detected
Expression in the splanchnic mesenchyme surrounding the foregut.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1929262
Entity Detected:Foxf1a, forkhead box F1a ( MGI:1347470)
Sequence:sense strand is shown

>MGI:1929262
CGGCCGCGCGGCTTCCGAAGGAAATGCCAGGCGCTCAAGCCTGTGTACAGCATGGTGAACGGGCTGGGCT
TCAACCACCTCCCCGACACCTACGGCTTCCAGGGCTCCGGAGGCCTCTCGTGCGCGCCCAACAGCCTGGC
GCTGGAGGGCGGCTTGGGCATGATGAATGGCCATTTGGCTGGCAACGTGGACGGCATGGCTTTGCCCAGC
CACTCGGTGCCACACCTGCCCTCCAACGGCGGCCACTCGTACATGGGTGGCTGCGGTGGCTCTGCGGCCG
GGGAGTACCCGCACCACGACAGCTCGGTGCCCGCTTCACCGCTGCTGCCGGCCGGCGCCGGCGGAGTCAT
GGAGCCGCACGCCGTTTACTCCAGCTCTGCAGCAGCCTGGCCGCCCGC
nt 343 - nt 740 of NM_010426.1
Notes:The probe used in this study by Mahlapuu et al., 2001 [PMID:11124112] is described as "a 400 bp NotI/KspI cDNA fragment located immediately 3' of the forkhead box".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Mahlapuu et al., 2001 [PMID:11124112] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11124112] Mahlapuu M, Ormestad M, Enerback S, Carlsson P 2001 The forkhead transcription factor Foxf1 is required for differentiation of extra-embryonic and lateral plate mesoderm. Development (128):155-66
Links:MGI:2135988 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI