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EMAGE:23941

hs155 VISTA human element 155
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:23941 EMAGE:23941

Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element hs155 - embryo 1.
Expression Pattern Description
Spatial Annotation:
EMAGE:23941Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
23941_wholemount_strong.wlz
23941_wholemount_moderate.wlz
23941_wholemount_weak.wlz
(what is wlz format?)
Download all expression domains: EMAGE:23941_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: no stars
Text Annotation:
StructureLevelPatternNotes
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (3 out of 5 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:hs155 VISTA human element 155
Sequence:chr16:53948201-53949846  (UCSC human hg19 )
>hs155
GTTTCGGAGTTCTCAGTGCTTTCTCTTTCACACATTGGAAATAAATGACTGCATTTTTGTTGAAATAATT
TTTTTTTTGCAGATAAATAATTGTTTAACAGAATAGAAACTTTTCTTCAGTAACGTCTTTTTTTGGAAAG
TAAGTTACAAGATTTTGCTTTAAAAATACAAACTATTTTTAAAGAATTGTACTCTCTAAAGTCAAACATT
CCTGCCTCCTGTCAAGTCCCTATAAGATCTGGTCTGTGGCAACTTCTCAGGGTGGTCAGATAGCAAGAGG
AGGACAGATTGGGAAGGCAAAATGGCTTTAAGGGTAAACCCCACAGCGTAAAATCTCATTACTGGAAAAG
CGCTTTGTGTTTAAGGATAGGTATTCCCGTGTGGAAGGACGGCCATGGCGAATGCTTAAGGGACTCACTA
AAATATCTTAAATTGTCTCCGTTAAACATGTAGCATCCTTAGAGGTCAGACAGAGCTGAAACTTGAACAG
CTGTACAACAAGCATCTGAGATTGTTTTTAATTGTGTTTCCTTTCTCTAACAGCAGTAATTCTTGTTTAT
ATTGTCAAGAACCTTTCCACTGAGCACAAGCGCACCATACTTGAAGGTCAAATGCTTAACCCTTCTGCAT
GGTTACAATGAAAATGGACCCTTTTGTTTTCATTAATGTATACCCCAGCCATGTCTACAGGGAGAATGGG
GGCCCCAAGCGTTCACCAAGCTGAAGCAACTTATTGTAAAAGAGCCACAAAGAGAGCATATTTTTGTTTC
CATACAACAGTTGTTTAGCTTTTGCCTTGTGCACCCAACCATAAGACGGTATGCTTACTTATCAATGGGC
AGAATTTTGGGGGACCATTTTGTTCCTTTGACCTGTGTTACTTTTTACTGACCCAACCAAATTGCTTAAA
AATTTTCCCTTTCTGCTGTCAGTGTTTAAAGCTGCTTAATGTCTCTGAAGTGATCCCTTCTTTCTTTTTA
ACACTTTACATTCCTGTTTATCACAGCACCTGTTACTATAGTGAACCATGAAATCACAAATGCTATGCAG
CTCTTATTGACCAATAATACTTTATTAAATATAAATAGAGTATCCTCCCAGCTTCTGTATGGTGTATAAA
GGTCTCAGTATATGAAGACAAATGCACATATGTCCATAGGTGCACATGTATTGTTTGGTGGGCAACAATC
GGGAAAGGAGGATGTTTTATTTATTTGTCAGGCAAGAAATGTTTCTTTTTCTGCTCCTTAAGAGTTAACC
AAAACTAAAGGGGCCAGTTCAGCAAACACTAAATGTGAGCCTCCAACATGAAGGCATCTTTGTTACTGAA
ACAAAAATACCACAGCAGGTGGTAGACTCGAACACAGGAGGGAGGAGGAGGTTCAGTTGTTGCCCATTTT
TCTAATCCTTTCAGAATACCCATTGTCTGAACCCCAAAGTTAACATGTTCCTGCTCAGTCTCATGGAGAC
AATTTCAGCGTGAAAGGGCTGTGCCCATCACTGGTTTTCGACAACAGTTTAATCTTTGGGTATGGAATGT
GTAACCACTCAACAAGGCAGGAGAGGCAATTGTCTGTCTGAGATGAGCCAATAATATCTGCTTATCAAAG
CATAAAACTATTCTGGATGTGGCAAGTCAGAGTTAA
(Equivalent mouse sequence - chr8:94032666-94034225  (UCSC mouse mm9 ))
Flanking Genes:KIAA1005 - IRX3 (human)
Primers:Vector specific   fwd:(+)GTTTCGGAGTTCTCAGTGCTTT rev:(+)TTAACTCTGACTTGCCACATCC
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Mutations:Tg(hs155-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:hs155 VISTA human element 155 same experiment
Data SourceVISTA