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EMAGE:23983

mm123 VISTA mouse element 123
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:23983 EMAGE:23983

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm123 - embryo 3.
Expression Pattern Description
Spatial Annotation:
EMAGE:23983Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
23983_wholemount_strong.wlz
23983_wholemount_moderate.wlz
23983_wholemount_weak.wlz
23983_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:23983_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
heart
detected detected
VISTA annotation: heart (5 out of 11 embryos)
limb
detected detected
VISTA annotation: limb (7 out of 11 embryos)
future spinal cord
detected detected
VISTA annotation: neural tube (9 out of 11 embryos)
nose
detected detected
VISTA annotation: nose (7 out of 11 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm123 VISTA mouse element 123
Sequence:chr6:72165180-72168822  (UCSC mouse mm9 )
>mm123
CCAAGCCTCTCTGGACATGAGATTAATGACCCTGAAATTATGATAAAATAAACGTTTGGTCCTGCCCTGT
CTGCCCAAGTGTAGGTGGGTGGAAAACAGTGGAAAAGACAGGAAGAAAGGGGTGAGGGATTTGAAGAAAG
CACAGAAGAAACGGGACCCAAATGGGAGGCTTGGGAAAAGCAAGCCACTGGCAGTCACTTCATACTGCTA
AGTGAGGGGCCTGCTGGCTCTGGGGTCTGAAGGGACAGCAGGAAGGGAGCTAATGACAGAGAAATGCAGG
GACCTGAGGAAGGAAAACCCTGTCCCCTGTCCCCTGCCCCAAACCCATCACAGCACTAATACCAGAAGCA
CACCCTGGCCATCCACTCCGGGGCAGTCTTGACCCCATTCCCTGTCTCAAGGGGTACCAGGAAGACAGGA
ATCCCTGCTTCTCTCTCTTTTCATCCCAGCTGCTAGTCCTGCCCCAGGATCCCACAGCCCAGGACAGGCC
ACCTGGTGACTGTTCCCAGAAGGTGCCCAGATTCTGAGCAGACATGTCCCAGAAGCCTTTGGCGACAGTG
GCGGCAGCCGGTTCTTTAAAAAGGCCTCACGTCATGCCTCAGTCAGCTGTGGGGGCCCAGGCACTGGGGT
GTTTACGGCTACCACTGTTCTCCCAAAAGCTCCTCTGTGCCGCCCCTCTGATGAGCCAATGGATGTGTCT
CTGTCTCTTCCCTCCTCTGTCTTCTGCAGGTCTCACCCCAGCCCCTGCAGACACAGTGCTTGCTTCTTCT
GGAAGCTGGGGTCAGTCAGGGTAACAGTGGGATGACTTTGCAGCTCAATGCTACTATTTGGTTAGAACTC
CAACCATGACAAGTTACCAGGCCACACTTTTGAAGATGACCTCAGCAATTACAGGTCAGGACCTGGCCAC
ACTGATCCAGACACACATCCAGACACACGCACACGTACACAAGGACAAACATCAGAGTATCTTCCTCACT
TACCTCTGGACAATATTTCCTTTCTTTTTGAGACAGGGTTTCTCCCTGAACCTTGTCATTTCATTGTCAC
ATGCTGCCACACTCAGTTTTTTATGAGTCTACTGGGGTGGGAACGCTGGTCCTCACCTTTTCATAGCAAG
CCCTTTACCCATTGAACCATCTCCTTAGCTACTGTCCTCCCATTAGACTCCCTGACCCTCTTGCTTGCCT
GTCTCTTCCAGCCCAGAGGAAAACAGTCCACTATTCCCCGGATTAACAGCTTTGAGCTTTAAAAAAAAAG
TTGTCAATATCCTAAGAACTAATTAGGTGGCCTTCAGGTACTCCAAAGAAGTAAGAAATGACACCTGGTG
TCAGAAGAGGAAGAAACAACACTGAAAGCAAACAAGGGGGTGGCGGGGGGGGGGGGGTGGATAAAAACCA
GAGATAAAAAGTCAAGAGCAAACAGCGGCGCCTGAGAAACACGAACTGCAGCCGCCAAGTTTTACGGCAT
CCAGCCCTGTTATTCATAAGCGAGTTTCCTCTCTCACAAAGAACCTTTTGCACGGTTTTCGCTGTTGCCT
CCAAACCAGCTGCTCGCGCTGTTGTATCCTGAGTGATGATGAGGTTCTGAAAGGGCTTTCTGGGAACAGA
TGGCCAGGGGAGAGCTGGGGAATGTGCCAGCGGAGGGCTGGGCGAGCTGCCAAGGCCTGCGGTGACTGAG
TTCTTGGGCTTCCAGCTCGCGTGCTTTCCCTGCCCTCTGCCCTCCGTGGCGCCAGCAGGCCTTCCCAGCG
AGCGCTCGGAACATCTGGAGTCTGGGGTTGCCAGGAGGGGGGGCGGGCGGCCTGGGGGGGGGGACCCGCT
GTTCCTGCGGAGCTCCCATAGACTTGCAGGCAGGCAGGCCTCTCCCAGCAGCTAATCAAAACCACAGCAC
CGAATGGGAACCAGGCGGCGCTCCCAGCTGCAGCCGGAGGCCGCCAGGCGACTTAACCCGGTGTCAGGCC
TCACTGGCGGCGCAGCCCTGGGGGTACTCGAAGCTGATGACACCCCCTCCCCCGCCCCGAATCCAGGCCC
ACCCCACTCCTTGCCACCACCAGCGGGCTATTGGCTCCCTGCAGCTAAATGGAACCTCCACGTGCTGCAG
ATGCCTATTTACATAAGGGTTCCAAGTGGGTATAGCACAGGACATAGCCATAGCGTGCTGGCTGGGGGGT
GGGGGTGGGGGGGCACTCCTGGGCAATCTTCAGGGGAAAAGAGGTTGTGGGTTTTCAACCAAAGAAAGGG
AAACCTAGTTCCTAGCCCTAAGGCACATGGCTTTCTCTTGGCCTCAGTTTCCCTTCTGTGCAATGGGGGC
CAGGGGGCACTGCTTCCGACTCCAGGAGTATTACTGACAAGGAGTAGAGATGGTAGATACAGTGCTTGGT
GCACAGTATACCTCACCATATGGATGGTGTCTGTTGATGGCGGTCTGTTTATTGGCATTCTTTTGAGCCA
AATGTTGCCTAGATTTCTTGATATAGATCCACGTCTTTTGAAATCGGGGATTTATGGACTGGCTGCTTGC
TGGCCTCACTTTAAAGGGCAGGATCAGCGCTTCAGATTCAAGTGCTAGAGATTCGAGAATCCCTAACCTG
AAAGATCCCCATCTGTCCACCCTGGGTACCTTCCCTGTCTTGAGATGTTCCTTCCCAGGACTAAATATGA
ACTTGTCATTTTGTGGCTGTACATTCAGAGATTCCCTTTCTGAGAAAAGGGCAACCCCTTCTGACACAGG
GTTTTGTTTAATCTCCTCAGCAAGGCAGAAAGGAAGGTATGATGTTCCTGCTTTATGGGGGGAGAGTCCT
GGGGACCAAAGAGGTTAAGTAACAAATCCAGGGTCACCAAGAAGAAGTACGAATGCCAGGATTTAACACC
TTGTCCCGTCCCAACATCCTGTTTTGTTTACTTCACAATTAAGCATGCCAGAGAAGGCAACACCCATGAG
AGGTGTAGAGCTCTCGGGGGGGGGGGGGTGTTTCACCCCAACTCTACACAGCCACCCTTCTGAACCATCC
ACATCCTAAGCACAGTGAGTTCTTGCAACAGAGATGGGTCTCATGTCTGAGCATGCAGGGCAGTTGCTTT
TTTTTTCTCGCTCAAGGCTCTGAGTCTCTCTCTCTCTATTCACACCCAGCACTACAGGGTGAAAGGCAGA
GTTCTGATCCACAGAGCTGGGGTAGCAGCACCCCAGCCTCTACCCGACCTCAGACCACCCAAGTAACATC
ACAGGCCACTGCAAGGAAAGCCGGCCAGAGCTCACCTGGGAGGCTTCCCAGCTAATGATCCCTCCAAGCC
AGGCCTTGCCAGACTTGTGGCCTAACGGTGTCAAATGTGAGAGAAGAAACAGCAGCTGAGAGGAGGCTCC
ATGTTGGAACAGCTGGCGACAAACATCTATGTAATTGGAATGCCAGAAAAAATAAATTGCATCCATTTTT
ATGACTGGAAGGGAATTGGGTGGTACTTTCCCACCCACCTCCCCCACCCCCTTTCCCCAGCATAGATGGA
CTCAACAGACTTTGAGAGCAAATGGCATTTAACTCAATGACTTAGCCTAGAGGATCTGGACTTGAGAGCT
CGCTGGCCTGCCTGAGTTCCATGTGGGTAGTAATCAGTGCCTTACAGAGGGGGACAGCCAGGCACAGCAG
TAG
(Equivalent human sequence - chr2:85997018-86001019  (UCSC human hg19 ))
Flanking Genes:Atoh8 (intragenic) (mouse)
Primers:Vector specific   fwd:(+)CCAAGCCTCTCTGGACATGA rev:(+)CTACTGCTGTGCCTGGCTGT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm123-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm123 VISTA mouse element 123 same experiment
 EMAGE:23910 same experiment
 EMAGE:24113 same experiment
 EMAGE:24217 same experiment
Data SourceVISTA