Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:24079

mm4 VISTA mouse element 4
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24079 EMAGE:24079 EMAGE:24079

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm4 - embryo 3.
Expression Pattern Description
Spatial Annotation:
EMAGE:24079Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24079_wholemount_strong.wlz
24079_wholemount_moderate.wlz
24079_wholemount_weak.wlz
24079_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24079_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
heart
detected detected
VISTA annotation: heart (3 out of 4 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm4 VISTA mouse element 4
Sequence:chr3:137446183-137449401  (UCSC mouse mm9 )
>mm4
TAACTTGTTTTGCTGAATCTAAGTTCCCAGTCACACCTGTCATGCTCTCAGTTAGCATGCCTTTCAGTTC
ATCATGCATGCATGGCCCTTTTCTATATGCTGACTGGATCTTGTCATCAACACTCAGACTACTCCTCTGA
AAAACAATGCTGTCTAAATGACACCCCCTTGAGTGGACAGGATTGTTTCATGCGCACCTTTGTCTCCTTC
TGTCTCTTCTCATCATCCCGTGATGACTGAAGCAACTCTTTGGTGCAACACAATAAACACATTACAAAAG
GAGGCTAAGACATGACAAGAGGAGAGCTGGGGAGATGGCTCAGCAGTTAAAAGCACTTACAGAGGACCCA
GGTCTGATTCCCAGTATCCACATAGTTGCTTACAACCACCAGAAGCTTCCATACCAAGGGATCTGATGCC
CTCTTTTGACCTCCCTAAGCACCAGGCACTCTGAGCATATGTACACACAAACCAAACACTCATACACATA
AAATAAATTAATTTAAAAATTGAAAAGAGAAATGGGAAGGGAACTCTCAGGCATAAAAACTATCTTGGGG
CTACCAAATACTAACATTAATTTTTTAAAAAAAAGGATAAAATCAAGATATGAACACAATACTTTTTAAT
CTTTTATTGAAATACCACAGGAAAAATTTAATGAGGCAGTGGGGGATATAGCAATACACAGATTATGTAG
CCAAAAATCAAGAGAAAACCTGAACAAAAACTATAGCTTTACTTGCTTTTAGTTGCTGGCTTTTATTTTC
AATTTTAGTGGTCACGTGGCTAAATAATATAGTTCCATTAGCTTTGCTATCAATAACATCTCTGAAATGT
GGGTCGCCATGGTAACAGTTGCCTAAGATGCTTTTCATACACTTGGAGGTAACTGAAGCCAGCTGAAGTC
ACCAACCTTTTATCTAAGCCTGAATACGTTTGCAATGGATGACTTTTGACACCAGATGGCAAAAGCTTTC
TCCTCAGAACATCCCAATGATGACATTTTCTAAAGGCTAAGGCACAGCCTGAAGTTAATGACAGACCTGG
TTCACACATCCTGTTGTCCTGTTTCCTCAAGCCCTGGGACATTGGATTTCTTTCTCACTAGATGTCTCAC
TAGGCCTAACCCTAACCCTAACCCTTCAACCTAAGGATTCCCACCCCACCCCCAATCTAGGCCTCCTCAT
GGCTGAGATCTGCCTTGCTTTATCATCCCATAAACTCCCCTAAACTCCCTCCTTGAGGCAGGTTTGAGAC
CCTTTCCCCTAACTCTAATGCCCCCTCAGACATTAACTCTTCAGCGAAACTCATTCTTCCTGTAATTAGC
ATTTTGAGGGATATGCAAAACAAGCCTAATTCAGTACCACAGTTAGGAGGCTAAAGAGTAAAGCTTAGAG
TGGAGTCTGGGAGGCCCCGTGAAAAAGCTGCAAAATTATCATATGAAAGGCATATGCTAATGAAAAATAG
AAGGCTGGAATCACACACACACACACACACACACACACACACACACACCCCAGACCTCAAACCACACTGG
GGCCAACTAAATCCAGCCCCTGGCACAAGAGCAGAGGCACTGCAGAGTGTCTGTAGGTGACCTGTAGCTC
ATTATAACAGTAAAACGTGAAGGCAGGGTAGAGATGTAATATGCTAATGAGTCCTGGGATACATGCAGTC
GTATGTAGAACCACATGTGACAAGAGCAGGACCCAGAAAGACTGCACTGTGCAAATGACCCAGAAGCCTT
CAGCAACTGATATAACCCTGCTCCACCCTTTATTTGGGTGTGGTCCCTTAATTTCCAAGCCTTTTCTTTG
CTCCAGCCTACTTTCTCCTTTGGAAAAGTCTTTTTCTAAAAAGCTGCCCCTCCTTCTGATACTATTCATG
TTTCTCTGTCTGATTTCCTGCTCCAGTATTTGAGAATCCGGAACCTCTTCCTAATGTGCCCACAAAACCC
CAATATCTCCCAGAACCTGGCAGATTAAACACCCTGTAAATATGTATCGCTAGTTAATGGCAAAACACTC
CACCTTCCTGCTCGAGCTTGCAACTACCCAGTGCAACAGGACACACTGACAGTTTACTCACAGTAGCCTG
CGTCCCAACATTCAAACATCGTATTCCCAAGTCTCCCTCCTCCCTATGCTCTCAGCCTCTGGCAATCACC
ATTCCGCTCTTAAAGTCCACCCATCCGGTCTTTTCAGGTTTTCCATATGATGAGGTCATGCAGTGCTTGA
CTAGAAAGCCTGTGCCTGGCTTATTTCACTTGGCAAAATGGTTTCCAATTCCATCCCTGTTGTCACGACA
ACAGCATTTCATTCCCCTGATAGCTTAGAAGTATCCAGTGGTTTAAAGGGTTTTTGTTGTTTTTTTTTTT
TTTTAAGTCCATTCATCAGTCAACAAACAGGTTCTTTCCATTCTTGGTTATTGTGAACAAGGCTTCAGTG
AGCATGAGAGTGCAGACGCCTCTTAAACATGTGAATCTCATTTCTATTGGCTATAATTACCCAGCAGTGG
GACTCTAAGTAGTTCTATTTTAATATTTAGGGAACCCCCACACTGTTTTCCATAATGCCTGCACCGATTT
ACATTCCACAGCACTATGTAAGGGTTCACTTCCATCCACGTTCTCTCCAGAACTCTTATCTTTGGTCCTT
TTGATAATACCCTTCTTACTACAGTCGTCTCTTACCGTAGCTTAGCTTTGTAAATTATCTGAAAGTGGTG
TTGGGTTGAATATTTTATAAACATTTTAAAAATAATTTTTTTATTTTGTGTGTTGTGTGTGTGTGGTGTG
TGTGTGTGTGTGTGGTATACAGTTACCTGTGGAGTCCAGAAGAGGGTGTCAGTGAGCTGCCTAGTGGGGT
TGCTGGGACCCAAATTCAGATCCTCTCCAGGAAGAGCAAAGTTTCCCTTCTTAACCACTGAGCCATCTTT
CCAGCCCACAAATGTCCAATTCAAACATTTTTCAAATGTTCACATAGAGCTGAAGAGATGGCTCAGTGGT
TAAGGTCTTGCCTCTGCCTACAACCCAAGCACTGTAGCAGATAGATTACGGGGGCTTACAGGCTGCCAGA
CCAGCCAAATAATATAGAGACCCTGCCTCAAAGAAATTAGAAGGCAATAGAAGAGGACACATGATATATT
CTTCTGGCCTCTGAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTACACTCCACAGAGTTGGATACTAGTG
Flanking Genes:Ddit4l - H2afz (mouse)
Primers:Vector specific   fwd:(+)CACCTTGTTTTGCTGAATCTAAGTTCC rev:(+)CACTAGTATCCAACTCTGTGGAGTG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Mutations:Tg(mm4-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm4 VISTA mouse element 4 same experiment
 EMAGE:24104 same experiment
 EMAGE:24193 same experiment
Data SourceVISTA