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EMAGE:24121

mm78 VISTA mouse element 78
TS17 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24121 EMAGE:24121

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm78 - embryo 7.
Expression Pattern Description
Spatial Annotation:
EMAGE:24121Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24121_wholemount_strong.wlz
24121_wholemount_moderate.wlz
24121_wholemount_weak.wlz
24121_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24121_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
head mesenchyme
detected detected
VISTA annotation: facial mesenchyme (7 out of 8 embryos)
heart
detected detected
VISTA annotation: heart (6 out of 8 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (6 out of 8 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm78 VISTA mouse element 78
Sequence:chr12:84173382-84175400  (UCSC mouse mm9 )
>mm78
ATTATGGTGTTCCTGCATTCCATCATGCAAATGCCTCTCACAGTGCCAATGGCTGAAGCTCCCATCACAC
AGAGAGCAGTTATTCTAAAGTCCCAGGTGTTGACAGCTGCAGGCTAGGCTACAGGAGGCTTCTTGTCCTT
GCTGTCAAAATATGGGACTCCTGGCCAGCACACCAGCCTCTGAAAGTGCCTTTCTGTTCCAAACTGAGGA
TACCTTTGCCTCCCACCTGCAAAGAGCCAAGAGCAAAGCTGCTGAAGTTGCCTTAACGTTCCTGTGCTGT
GGCTGTGAGACCATCAAGCCTCTGTTTGGGAGGCAAGATACAGAAACGGCTGACCTGGCAGGCTGCAGTA
TCTGTGTGCATGGTCATATCTGACTTGGAAGGACTCTTAGGAGAGAGTGTATACAGAGCATCTTTCATCA
GGTTCCCATGTCCAGGGTCAATGTTCCAAGGCCAAGCAATGGGAATTCCTAAACCCAAGCCCTAGGCATG
GACCCAGGGGCTCCAGGGGCGACTCAAGCAAGCTGTACTTTGAGCTTTAAGTGGAAGAATCTGGTGTCTA
AGGTTCTGGGAACGCTATTTGCAGCTACATAGCCTGGGAACTCACTTCAGAGGGGATCTCTGAGTTTCAG
CTTTATCTTATCTTTGGGGTAACTGGAGAAGCCTAAACCAGTTATTGTGAGATACCAGTCAGAATGTGGT
AGGTGATATGTCCCAGGAGGGCCCCGGAGCAAAGGCAGGGAGTCTGGCAGGTCCCATTGTTTGTTTGTTT
ATGGGCTGTCTGGGAGGAGCCCCAGCTGGTACATCTAATTACACCGGAGAGGTGCTCACACAAGGGCTTA
TTCCAACCGCAAGTCCCCAGCCAGAAACTTCCAGGAGTCCAACCCCAGCAGAGGCTGGAATTTATTCCTG
GCAGCAATAACTGACAGCTCTTCAATTCGACGTAAGGGTTTTCATTAGAGCCACAAGCAAACTCCCAGAG
AGCAGTGGGGGGAGAGCAACCGGGTGTTTGCTGGAGATAAAGCGGCCCAGGCCTAGCCTGTCAGCTGCTG
TGTTCTGCCAGGAGGGGCTGGGGTGGTGGCACTGGCAGCTGGCCAGAGGCGAAAACTGAGCTCTCCTGGG
TGAGCCACACAGTCCCATGCCTGGGATCTGGTTTCCCTGGGCCTGCTCCAGGTGATAAGTGTTAATTAGA
ATTGTGTCCCCCTGAGGAAAGGTCCCTGCCTTTTTTTTTCCACTTAGTTGCCTAAGAACCCAAGAGGTAA
GAAGCTGTTGCTGGTGATACCGGCGGCCAGTTCTGCAAAAGCAAGAACTGGGCAGGATTAAAACCTGCAG
CCAACAATTAGAGGGACAGAGTAGTCAACTGGTGTATCTAGGGACCCACTAGGGAGGCTTGACTCCTGCC
TCCTCCGCCATTTCCTGTGTTCTTGATGAAGCAAGTTGCTCCGTCTCTCTTTCTCTGCTTTTCTGCTTAA
GAGGAGATAGTGTTGCTGGTTAGCCCACAGGGTTAAGGAGTGAGCCCAAGCTTGAGGCCTGGCTCCAGTC
CTTGGCACTCAGGTCCCTTCCCCAAGAGCAGGAAGGACTAGTAATTTTCCAAAGTGGTGATTAACAGTCC
CTCTGACAGGAGCAAACCTCAGGTATATGAGATGGAAGGAGGAGGGAGACCGGCCTTGAAGATGACAGTT
CTGTGTTAATGCAAGTCTTCCCAGCCAGCCTCTACCTCCTCTCTCTGACTCCTATTCCGAGCCCTGCAGA
CTGCCCAAGGCCAGCACGGAAGCTCTCGATCTGTGCAGTTCCCCTTTTCCTATCCTATAGACACACCAAT
CCCCTCTCCTCTTCCAGGAGGAAGTGTTCTGTATGGAGGGACTGGCTCTTTAGATCTCCTCGGTTCATTA
CAGTTTTGAATATTCTGTGCATTGTGCCTAACAGTGTTTAAATGCCCCTGAGACGTCAGTATCTGTGTGC
TTCCTGGGCTGATTCTTGCACTTTCTAAATGTGTAACCCTGTTCTTGACTCCGAAATAA
(Equivalent human sequence - chr14:72946259-72948442  (UCSC human hg19 ))
Flanking Genes:Rgs6 (intragenic) (mouse)
Primers:Vector specific   fwd:(+)CACCTGGTGTTCCTGCATTCCAT rev:(+)TTATTTCGGAGTCAAGAACAGG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS17
Mutations:Tg(mm78-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm78 VISTA mouse element 78 same experiment
 EMAGE:23948 same experiment
 EMAGE:24057 same experiment
Data SourceVISTA