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EMAGE:24165

mm69 VISTA mouse element 69
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24165 EMAGE:24165

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm69 - embryo 7.
Expression Pattern Description
Spatial Annotation:
EMAGE:24165Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24165_wholemount_strong.wlz
24165_wholemount_moderate.wlz
24165_wholemount_weak.wlz
24165_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24165_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
heart
detected detected
VISTA annotation: heart (17 out of 17 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm69 VISTA mouse element 69
Sequence:chr9:63892591-63894756  (UCSC mouse mm9 )
>mm69
CACCAATCAGTTGGGAGCACATGTCTTAGAAGCTGTGCAGGCATGTCCAGCCTTTGGATGTTGTGACATG
AAATTGTCATCTACAAAATTCGTGGTCAAGAAACACATAATAGAGTTACCAAAAAAAAAATCCAAAAAAC
CACACTTGTGATGTTTTAAGTAACTTTATGTCTTCGTGTTGGGCACTATTCATAAGTAGCCTCAACAGCA
TGCAGCCCTTGGGCTATGGGTTGGACACAACCACCGGTGGACACTACGGAGTGATGAGGCCAACAGTGGC
TGTGAATTCCCTTTGCAAGGCTTTGCAATGCACTTAACAGGCTGAGAACTGAGAATTCCCCCCAACGTAC
CTCTCAGAACTGGTCCCAGGGGAACAGAGAGGCCTGCAGCTGTCCCCGTTTCCTTCGCCTCTGTCCACCC
CACCCCCACCCATTCTGGGGTGGCCTCTGGCTGCAGGAATGTGATGGTATCTTGGCAAACAGACAGCCTG
TTCCCAGAGGAGACAGGGCCGCCTCTGGGAGGCCTGCCTCTGCAGACCGGGCCACAGTAAACACAAGGGT
CTGTCCTCTTTATCAGCTTCTCTCAGCAGCAGCGGAGACAGTCTGCCTGCTGGGGAGCCTGGAGGTGATA
AGCTCAGAGGCTTCGCCCAGCTCCCCGGCAGTGGGAATCTAGAGTCTGCCCTGGCTTGGGGCCCCTTAAA
CACTTAGTACAGGGTGGTTAGCTGGCTGCCTATTCACGGAAGAAGCCAAGCAAGGTCAGAGTGGTGTCAT
AGCCTATAAAGCCCTGTTTGCTCTCAAAGACACAGGGATCTGAACTTCATGGTTTTGCAAGACATCATTA
TCACCAGCGTCATCTCCACAATCAGGGGATGCTCTTCCCTCCAGAATGTTCCAGTCCACACCCCATTAAT
TGAATGCAGTAAAGAACTTCCGGCAGGGCCTGGAGGGAGCTCAGAGAAAGCCACTGCAAGTAGGGTCGAG
AGGACAACTTCCTTGTCATTAGCCCAGTGTGGCTCACAGTGTCATGTCTTTCTAGGTCAGAGCCCACGTT
AAAATGTTTGCATTTTATTTATTTGGGAGGGACATGTGTGTCATGACGTTTGTTTGGGGTCAGAGGACAA
CTTGTGTCACTCAGTTCTCTCCTTCCACCGTGTGGTTCTGGGGAATCAAACTCAAGTTGTTAGGATCAGC
AGTAAGTGTCTTTTTGTTTTTATTTTTGGTTTGGTTTGGTTTGGTTTTTCGAGACAGGGTTTCTCTGTAT
AGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG
CCTCCCAAGTGCTGGGACTAAAGACATGCGCCACCATGCCCGGCTGGCAGTAAAGTGTCTTTACTCACTG
AGCCCTGTCACTTGCTCACAGCTAACTTTTATGTGAGAGGTCTTGTCCACTGTGGCCTCAATTTTGCAGC
TTGCTAAGGATACTAGAAGAAAACTAGAGAGAAGGAAAGAGAAGGAACATGTACTGGCCAAGATTACAGA
GCCGGGCAGAGGAGCCCTGAGATCAGTTCCGAGACCTGGGATTCAAAGTGGAGCATAGCCGTCTTTCTAT
GCTGGGCACTACCTGCCCCACAGCAAGCAGTGAAGGGCCAAGTACATCTCTAAGTCAAGTCCTGGATCTT
CTCTGGAGTCTCAAGGTAGATTATTACTCAGGGAGTGACACTGGGGAGACAGCTCCGTGGGTAAAGTGCT
TGCTCTAAAGGCATGAGTTTGATCCCCAGGAGCCACAGAAAGGCCAGACGTGATGGCAAGTGCCTGTAGT
CCAAGCACTGGGAAGGCAGAGACAGGAGGAACCCTGGAACTGGCTGGATGATCAGCGTAGCCCAAACAGC
AAGTTCCAGGTTCAGTGAGTGATCAGAAGCTAATGTGGAAGGAGAGATGGCTCAGCTGCTCAGAGCGCTT
GGCTGACTTCACTTCTCAGGACCCATGTGAAACCACTCATAGCCTCCTGGAACTCCAGCTCCAAGGGAGC
GAGAGCCTTCTTTTGGCCTCCACAGGCACCTGCGCACATGTATAAACACACAGATGGAGACACATAAGTA
AAAATAAAAATTCTTTTAAAAATAAAATGAAGTGAAGGAAGAGGATATCTAATGTTGGCCTGTGGC
(Equivalent human sequence - chr15:66971321-66972541  (UCSC human hg19 ))
Flanking Genes:Smad6 - Lctl (mouse)
Primers:Vector specific   fwd:(+)CACCAATCAGTTGGGAGCACAT rev:(+)GCCACAGGCCAACATTAGAT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm69-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm69 VISTA mouse element 69 same experiment
 EMAGE:23901 same experiment
 EMAGE:23952 same experiment
 EMAGE:23988 same experiment
 EMAGE:24006 same experiment
 EMAGE:24063 same experiment
 EMAGE:24087 same experiment
 EMAGE:24095 same experiment
 EMAGE:24198 same experiment
 EMAGE:24209 same experiment
 EMAGE:24227 same experiment
 EMAGE:24278 same experiment
Data SourceVISTA