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EMAGE:24187

mm140 VISTA mouse element 140
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24187 EMAGE:24187

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm140 - embryo 1.
Expression Pattern Description
Spatial Annotation:
EMAGE:24187Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24187_wholemount_strong.wlz
24187_wholemount_moderate.wlz
24187_wholemount_weak.wlz
24187_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24187_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
mouse
detected detected
VISTA annotation: other (4 out of 6 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm140 VISTA mouse element 140
Sequence:chr10:20204708-20208573  (UCSC mouse mm9 )
>mm140
TGCTGAATCTATCACCCTGAGAAATCCAGGATTCAGTCAAATAGATGTTTTTTCAAAGAGCATTTCAGTA
AATGGCTATAGGAATAAGATACTGACTCCTGTTCTGTAGCAACGCAGTACCTGTTCCTTTCAAATCTGGG
ATGGAAAACTATTACTAGAAATATTATTCACTAGAATTGATGGGGTTTATAACTAACTTATTTGAGTTCT
CAGTTGAGCAGAATTTTCATGATGAACCCCTCAACTTAGGGGAAAAGGGTCAACAGCAAACAAGTTGCTA
GTGAAGACACCTAAATTTAAAAATCAAAACAAAACAACTATAGACTCCAAGTAATAGGAGATATGGAGCC
TGAAGTAGCCACTTTCTGTGACCAGGCATGGCTTCCAGTGGAGATACTGGGACACCAACCCAGCCACAAA
GCCTTCCACCTACAATTTGTCCTGACTTCAAGATGGGCTGGGGTAAAGGTGGTACAGAACTTGTGGGAGT
GACCAGTCCATGACTGGTCCAACTTGAGACCCATTCTGTGAGAAGTAGCCTATGCCTGTCACTGTCTGGA
GGGCCAGGAATCAGCGGCTGGGTAGCCCAGAGACCTGGGATAGAACCAAACCTGACAGGGGAAAAAGGTA
ATGAACTGAATGAACTGAAATGCCTTCTATTGATGTTCTGCTACACTTGTAGATGGGAGCCTAGATAGTC
ATCACCAGAGGCTTCACCCAGCAACTGAGAGGAGCAGATGCAAAGAGCCCAGCCAAACATTATTCACTAG
AATTGATGGGGTTTATAACTAACTTATTTGAGTTCTCAGTTGAGCAGAATTTTCATGATGAACCCCTCAA
CTTAGGGGAAAAGGGTCAACAGCAAACAAGTTGCTAGTGAAGACACCTAAATTTAAAAAACAAAACAAAA
CAAAACAACTATAGACTCCAAGAGCTCAGGGAAGTGGGGAGGAAGGATTGTAGGAGCTAGAGGGGTCAAG
GACACCACAGGAACACAGGCCACAGAATCAACTAACTAGGACCCAGAGGGGTTCATAGACTGATCCGACA
ATTGGGGAGCCTGCATGGGTCTGACCTAAGTCCTCTGCAGATGTGCTATGGTATGTAGCTTGGTGTTCTT
ATGGGACCTCTGACAGTGTGAGCAGGGCCTCTGACTCTTGTGCCCTTTGGGATCCTTTTCCTTTTACTGG
GTTGTCTTACTCAGCCTTGATCTAAGGGTTTGTGCGGGAGAATCTTATTGTAACCTTTTCTGCTATGTTT
GTTGATATCCCTGGGAGGCCTACTTAAGAAATGGAGGCGGGGTGGATCTCTGGGAGAGGGGAAGTCAGGA
AGAAAGGGACTGGGAGAAGAGGAGGGGATGGGGAACTACAGTCAGGATGTAATTTATGAGAAAGAAAAAC
AGAACAGAATAGACAGCATCAACTGGAGCAATGGCCCAGGTTGACCACATACCCAGGAGATCCAGCTTCA
GGGCTTATGTTAGTGAAGCTCCAGCTGTACTCTGAGAAGATAATGGCTCTTAAACCTCTTGATAGCTCCA
TATATACACATGTATATGTATATGTATATATGAAGTAATCTTTCATTATTCCACGAGCCCCTCTGATGTT
GACTGATAACGCTGGTGAGAAGAGAAATAACTGTGTAAGGCTGTCCTCAGGAGAGCTGAGGCCACAGGGC
TTCTGGCCTTAGGACAGAACAAGTGACGTCCTTGTAGTCCTTTCAGAGCTGTTCTTGCTGGCCCCTGGTC
TGGGCAACCGTCTGCTTACCTAGGGTTTTATATCCAAGCTAAACAATTATTTTGACTATTCATTAAACCC
TTGTTTAACATCAGCAGCTTTTTTTTTTTCCTGGCAAAGGAAAGGTGCGGTGGAAGCCGGGAGGAAGCGT
TGACAGCCGAGCCGTGTCCTCGGTCTGTTCTTATTGTGTTCCAAAAGGAAGCAAACAGCAAGGGAATTCT
TATTTTTGAAAGGACTGCTGCTCTTTTGCTCCTTCGGAGCTGAAAGCACAACATGTCGTCCTTGGTCCTG
AAGGCTGCAGACGCAGGCCGAGGCTGAGCTGAGTCATTCGTTTCGGGAGCCAAGACCCAGAGACAGTCCC
CAGCCCCACAGGGGACGTAGCTCCGGATGGACCTCTTGCCCACTTGGCCTCTCTTGTGGTGTCTGTTTAA
TAAAAGCTGTGCTAGGGGAAGGACGTTGATGTGGCCTCTTATGTAACTGGCAGAGAAGGGTGGAGACTCT
GACAGTGGTGACAGCTTACAGTGGCTGAAACATGGGCCATATGACAAGAACCAGACTCCTGCCCCATCAA
GTGCTTCCAAGGTCATTTTGGGGTGAGCAGAGGGCCTGAAAAAGGGAGCGAGCAACAGTGTTCCTGCTGC
GTCTGAGGAGAAGAAAGATGGTGGTGATGATCTTGCTATATACAAGTTTCAGGAACCATGGGGTGGGATC
TCATGGCAGGGGTATCAATAATAATCTGAAGAAGATAGCAATGGCATAAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGGGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAGAGAAACTTTGCAGC
AACCAAAACATGGTGGACAAAATGATACTCTGGTAGAAAGCCATTTTCTTGAGCTTCCTTGTGCCCTGTT
GCCAGTCATGAAGACAGAGAACCAGGTCTGCACACCTCAGACATGGGCTCTCATCATGATACACTGGGCT
CCAATGCAGGCTTGTTTGCTAAAGGTCTTGGTTAACAAGGGTTTGGCCATGCTCGGATAAATATATGGGC
AACACAAATTATACCTGGTATACTTTAAAAAAATTTTTTTTGGGGGGGTGAGGACACAAGAGTGGAAGGG
TGGACTGGGGAGTAATGGGAACTGAGTATGATTGGGGTACATTGTATGAAATTCCCAAGTAATCCATAAA
ATATATTATGTTGGGAGAAAAATAATGACTTCTTAGCTAGCTTAACAGTTGTACAATTGAAACATCTGTG
GACTTATGAGATACTGTAAACAGCCTGTGTACTTAACTCAGTCAGAGATTATTGTCTGAGGAGTGTTGTC
TTACATGTGAGACCCAGTGCAGCTGACTAGACTCGGTGTTTCCTCCGAGGATTTCAATTGCGGCAGGCTC
TGTCTAACCACAGAGGACTGTCTATCAGATGGGCTAAGTAGAACGGTCCAGCTTTTTGATTGGTTTGTTT
CAGAAACTATGCATTTCTGGGTCATTGTTGGAAATCATTTACGTAGCAAAAAGAAACTGACAGTTGTCCA
GAAAGCAAGCTTTTGACAGAAGCAAAAATAATTTCTTTGCATGCATAAAAGAAAGAACAATGTTACTAAA
CGTTACTAAACAATACACTCTGCAACCTTAGCTTAGGGTTATTAAATGCCTGGTGACAAAAGTGTATTTT
GGGACTTGAATGCTAGTCTCTAGAACAGGTAAGGCAGGCTCTTACCCAGACTAGCAGCAACAGGAGCTGT
CCTCACTTTTCAACTTGGTAGTGTTTCAGAGGAAAAAAAAGTTCCAATCCCTGAGAATACAGGAGCCTAA
TTAAAACAGTCTATTGCAAAGGTAGTAGCAGGATTGCCTTAGCAGGGTTCCAAGGAGCTGAGAAAGAGCT
CTTGTGAGGACTGAGAACAGCCTGAGGTGGTGTCTCAGGGACCAAGCCACCTGGATCTGCACTAAGTAAG
AAAACTCCCTTGGCAGCGTTGTAAGTGGCACACTATTTCCTGGACAATGCCTTCACCTCCAGTATCTCTC
CAAAGCTAAGCCTGCT
(Equivalent human sequence - chr6:136423552-136426361  (UCSC human hg19 ))
Flanking Genes:Pde7b (intragenic) (mouse)
Primers:Vector specific   fwd:(+)TGCTGAATCTATCACCCTGAGA rev:(+)AGCAGGCTTAGCTTTGGAGA
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm140-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm140 VISTA mouse element 140 same experiment
 EMAGE:23917 same experiment
 EMAGE:23980 same experiment
 EMAGE:24109 same experiment
Data SourceVISTA