Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:24188

mm138 VISTA mouse element 138
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24188 EMAGE:24188

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm138 - embryo 6.
Expression Pattern Description
Spatial Annotation:
EMAGE:24188Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24188_wholemount_strong.wlz
24188_wholemount_moderate.wlz
24188_wholemount_possible.wlz
24188_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24188_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
heart
detected detected
VISTA annotation: heart (8 out of 8 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm138 VISTA mouse element 138
Sequence:chr18:11371312-11374453  (UCSC mouse mm9 )
>mm138
TTTTTGCAAGATCTCTTGTGTGTACTGAGAGGAGTGGGGTAGGTTGGAGGATGATTGACAGGGAAATGAT
TTCAAATAATAATACAGGAGAACACAGTGGAGGAAAGTTTCAGCTGAGATCCAGTGACTGTGGAATCATG
GTAAAGGAGGATGCTACATGAGCTGGAAAAGGGAAACTCGTTCAAGTAGCTACATACAACACATGCAGCC
TCTTAAGTAGGCTTGTAGGCATCCTACATCTAATGCCTTAAGTAGGCTCATAGGCATCCTACATCTAATG
CCTTAAGTAGGCTTATAGGCATCCTACATCCTCATGGATCATTCAAATTCTCATTTTGAATTTGTTTCTC
TTCCAGGGTTTCCTAGTACATCCCCAAGAGTGAAAATAATTTTGACATTTCTGACATAACCTTGGGGGAA
CCTGAAGACATTAAACCACTCAGGCTAAGACCTCAAGTTTCCTCCGCGGCTGTCAGACGCCTGTCTAAAC
AGTCTCTCGCTGGCCTACATGAATTCCCTTGCATACCACATGCGTGGTCTATTTATATGTTTCCTTGTCC
TGAACAAGATTTGGCCCCATTGTGTGGGAGCAACATGGAGAAAGAAAAACAAAGTCTATCCACAGAAAGA
AAAATGGAGACCATGGGAGCTTGGAAGAATTTGCATACTTTGTTCATGGTGATGTAAGAGCCTTTGAAAC
ACCTAACCCACGCATTCAGAAAGTGTTGAGGCTCTCCAGCTCTGTCAGGTGGGTTGCCATTAAAAGGAGA
AATGTAAACACTGGCTGGCCTGTCCCCACCCTTTCTACTTCCCTCACCATCCCCCAAAGAACCTAGCAAA
TTAGTAGAGACTCCATTTGGGTGGAATTAAGGGCCTGTCTGTTGAAGGGGGTGGGTATGATGGAGAGGTG
GGAGCTGGAGAGAGAAAGGTGGTGCTGGGGTGAGGCTGGGTGAGCAGCTCTGGGTTTTAAGGAGGCGCAG
GGCAGAGCCAGATGACATTTTATGGATTAGGTGTAATGTTCAGGGAATTTGGCATTTCTGCCACAGTGCG
CTGGCTGCCCTGCTAACATCTTTCTCTCTCCCTGCTGGTAAAGTGCAGGAGAAAAGGGTTAAATAAATGT
TTGTGATATGATAAGGTGCTTGTTTACTCAAGGAATGACAGATCATTGGCTCCAAAGGCAGCCCTGAAAA
ATAGTCGGCCAGAACTGGCTCTCCCCTCGGGTGATGTGATTTCCTCCCAGGATTCCGCTCTTTCTGAGGA
CTAGCTTGCTCTGGGAATTAGGAAAGACTATTTCCCTGCAGTTAGCAACGGACATGTTGGCTCTGAGGGC
TGCAGCTCCCAAGGCTGGCTGGGAACTGGGAAGGGCTGGGCCTGGGGAAGATTTTCTGGCCAGGGACAAA
CCCTCACAGAGTGCCATTCTGAGCAGCAGCCTGGGGCCCTGCTCACTATCTCAGGAGGTTTTATGGCAGG
GATCCTCTCTTGTTCCTCATATAATGAGAAAAGGGTTTACTCCCCAAGAACGATGTCATGCTGCTGCTAC
ACTCACCTCTCATCACAGACTGCATATCCCACACCTCGGTGATGCCATGTTAACACTCAAACCCAGGGAA
TCCATGCTTTTCCTTGAAAACCCTCTCAGCCCCATGAACTTTCTCCTCTTAGGCTCTAGTGATTTCGTAG
CTAGAAGAATTCCTTCCAGATCCCCAAACAATGAGACAGTCACAGGCAACTTATGCCCCTGCCATTGCTG
AAAATCAAAGGTGCCTGGCCTGGGCACCCAAGCCAGTCAGACGCTGAGATCATGACACCATTCTGGGAAC
TATGATTGTTTCAGACCATACCCTGTTTCCACATTATACTGAGTTGGCATCTGCTGAAGAGCCAGCGTTC
TAGGCCCAGAGAGCTTTCCTAGCACCATGCCCTGCCTCTGCTCACCCTTCTGGCATGCTGTGGAGGCTGC
TTGCATACTTGCTGAGTAGAAGGGTTCACACAAGATGTTTGGCATAGTTCTCATTTAAAAGAGTTCACTG
CCAAAATCAAACACCAAGAGGGGAAACAAAAAAAAAAAAAAAACAAAAAAACAAAAAACATTGTGACAGC
ACTGCTGCTTTCTTCAGTATCCTGGGAACTACTGTATTATTTTCACAACAGCCCCGTGGACTTATCAGCC
TGTTTCCCAGTTTGCAGGACACCAGGCACCAGTTGGGGAACCCAGTGCCCTTCAGACACGGTGACTCAGG
TTGGAGCTGACGTTATCAAAGCTCCACATTCAGGCTATTTTTATGAGTGCGTTCAGTGCTGATAGGGCTC
CTTGAGTGGACACAGTCATGTGCTCATGCTTAACTGCATGAGATAACACTCTCGTCCCCAAGAGCTTACA
GCTGACTTTTGCAAAAACCAGATGGCAGAAAATGGTTTCCCTCTGCCCATCAGCAGTAACTGAGGGGGTG
GAGATGAGAAGGGAGCAGTCAAGCCATAGGTCTCTCAGGGTGGGACCTCTGCTTTAACATCATCCCATGC
GATATTTTAATCATAGCCACATTAGTCGTGACTCCATACACTGCATTTCTAGCTATGAAAGTTCAAATTA
ATTTTAATAACAGTTTAATTAAAGGCCCATTGGGTCATCAAGATGTCTCCTATCATTCACAAACATAAAC
ACTGAACTGTCAGTGGGGACATGAAGAAGTGTTGATTGGACTTATCAGTCATATCTGAATTAAATGCTGT
GAGGGTAAATCTTATGGATAATCTTAAAGACTTGCCTGACTGTGTCCATCTGAACAGTGGGAACCAGCCT
TCTTCACCTACACACCCCTGTCACTATCCCCTAGGGAACCTCCCAACAAGTGATTCAAGTAACTCCCTAG
TCCATCTAGAAAGAACTGTTGTTTTCAGACAATGAATATCAGCTTGTTATGACAATATGAGAATTATCAT
CTTAGCACAGGTATAACCCCAGGGATGAGGTAAGTAGATAACTGGGCACATGTTTTGCCCTCATCTTGCC
TTTTTCAAAGCTGACCCTGAGGCTAAGAACTGAATGGAAGTAGTAGATATGAGCTGTAACGACAGGTGTG
CCAGCAGGAATAGGCAGAAAGCCAGTATACAGTGTATTATGAGAAGGCTGTCACTGATGGAA
(Equivalent human sequence - chr18:20049582-20052986  (UCSC human hg19 ))
Flanking Genes:Gata6 - Rbbp8 (mouse)
Primers:Vector specific   fwd:(+)TTTTTGCAAGATCTCTTGTGTG rev:(+)TTCCATCAGTGACAGCCTTCT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm138-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm138 VISTA mouse element 138 same experiment
 EMAGE:23920 same experiment
 EMAGE:23972 same experiment
 EMAGE:24084 same experiment
 EMAGE:24107 same experiment
 EMAGE:24180 same experiment
 EMAGE:24289 same experiment
Data SourceVISTA