Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:24191

mm143 VISTA mouse element 143
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24191 EMAGE:24191

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm143 - embryo 2.
Expression Pattern Description
Spatial Annotation:
EMAGE:24191Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24191_wholemount_strong.wlz
24191_wholemount_moderate.wlz
24191_wholemount_weak.wlz
24191_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24191_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
heart
detected detected
VISTA annotation: heart (3 out of 3 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm143 VISTA mouse element 143
Sequence:chr3:104400858-104404522  (UCSC mouse mm9 )
>mm143
GGCCGTGCTTTTCCTTTACTAAGTGAAACGTTGGATACTATACTGACTCTCAGCTTTCTGATCTTGAAAG
GGCAAGTTAGTTCCAAGTTCTTGAGGCTTCAAATCCTGACTGAAGCCTAAGAGCCAGGGCTGGCTGGTGG
ACATTAGCTACTCTTTCATTTCTGAAGGTTTTGCCGGGTGGGCTCTCAAGCTTCAGAAACAGACTGTCGC
CGTCAGATTTCTGCCTGTCTCCTGAAAACCAAAGGATAACAAATACTGTTTCTGTAGCTACCGAAGAGAC
AGACCGCTTGGAGGAAGATCTACATGGCTCTGCAGACTCCCTGGCTGTGCCAACTCTGGGGGAGTCGCTG
CACACAGCAAGAGTCGGCTCTAGTTCTTGGCTCTTGGCCACAGTTCCCACAGCTACAGCAACATTGGCAG
CTCCTGCTTTCGTGCAGAGCTTCTAGCATGCTGGGAGTCTCCTGCTGACAACCTCTGAAAGACAAGGCTC
CAAGTCCTACTAGCTAAGGCAGCCAGAACTTAAAGGCGAATGGCTGCGGCCAGATCCCTGGAATCAGGTC
ATGTCAGAATCTACTGCAAGAAAGGATGAACCCCGCCTGTGTATGTTATATAACACTTTGCACAGAGGGG
ATAGTATAGAGAAACTATAGACCTAAGTCTATAAAAAAAGCAGGCTGAGCAAGCCATGAGCAACCTCTCA
CCTCTCCTGAGCTCTCAGAGTTCAGGGAAGAAAATGTAGGTTCTGAGGAGCAGATTTGCTTTTAATTTAT
TTTTTTAATTCTTTATAATTCATCTGTTATATTCAGAATGAATTCACAAATTTTGGTCAATTTCATATCT
TATTAACCAGTGTTCTAGAAATATTTTTACTTATGTAATTAATCTTACTTATTTACTTAATTTTGAGACA
GGGCCTTACTATGTAGTCCTGGATTCCCTGAAACTTGTGTAGACTAGGCTGGCCTTGTCTTAGGGTTTTT
ACTGCTATGACGAAACACTATCGCTAAAAGCAACATGTCATAGTCCAACACTGAAGGCTGAAGTCGGGTC
AGGAAGTCAGGGCAGGAACCTAGAGGCAGGAACCTAGAGGCAAGAGCTGAAGCAGAAGCCATGGAAGGGT
GCTGCTTACTGGCTTGCTCCTTCATGGCTTGCTCAGCCTGCTTTCTTATAGACTTAAGACTACCAGCCTA
AGGATGGCAACATTCACATGGAGCTAGGCCCTCCCACATCAATCATCAATCAAGAACATTTCCCATAGTT
CAATCTGCAGAGTCATTTTCTCAAGTAAGATCCCTTCTTCCTGGAAAAACCTAGCTTGTGTCAAGTTGAC
ATAAAAGTAGCCAGCACAGTCCTAAAACACAGAATTTACTAGCCCCTGCTAGGATTAAAGACATGTACCA
CTACACCTGGTTTTTCTTTCTTTTCTTAAATTTGGGGGGTGGGGGCTGGGGAAGGGTGGCCCATGGGCAC
ACATGCTCACGCTTGTGGATATGTGCACATGAATGCAGGTCCCTTCAGAAGGCAGCAGAGGGTGTTTGAG
CTACAGGCAGTTGCCAGCTGCCTGTCAGGGGTGCTGGGAACTAAACTCACTGTGTAGTCTTGGATGGCCC
AGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAAAGAAATCTGTCTGCCGCTGCCTTTGCCTCCCA
AATTCTGAGACTACAGACTTGTAACATCACACTGGACCATTGCCCTCTTTTACCTCTCTCCCATTCCTTC
CTGCCTCCTTTCAAGTTGTTGGAGTGTGCTGCAGGAGGGAGAGAGTCTCAGTTTAGGTAGAGCTGTTCAC
ATGAGCATAGGTGGGGGGTTATGTACCAGACACTGGGCAATTTACCAGTGATTACACCACTGAATAAAAT
AACTTCCTTCTCTAGCAACCATTAACTGCCAATAGTCCCTCAGGGAGGGATAGGGCCTGTGAGCTCTGGG
GCAGGTTTTTTCCCCTACACTTCTGGGCTCCCACACAGGCAAATACAGTGAGGATCCAGGCCTTGCTGTG
GTTGTTTTGTTTTGCTCTTTTTTTGAGGCATGGCCTCACTATACAGCCCGGGGAGGGGGGGGGGGCTCCA
GCCCAGTCCTGCTTCAGAGTTGCTGAGCTTATAATAGCCCTTTGACACCACTTCCCAGGCAAGACCCTGC
CTTCTGAGACTCATTCTTCCAAGACTCCTAGGTAGATTCTGAGCTCCAGGCCACAGAACACTGGAAATAT
TTGGTGATCCACGACCTCTTCTGGGAGAGATCTCTTGATTTTGCTGGGAGAAGCATTCAGACTGTCTGCC
CTGCTCATTGAAGACCAAGCAGGGTTCTAGACTGCCAAGTTCATTTATTCAACATAGGAAAATTTATTAC
CATTTCCTGCCTCAGTCCAACATTCACACCTGAAACGCGTGGCGTTCCTAGCAGTGCTTAAGGGTTAACT
AAATGGGAAGGCTTGGCCCCTCGGTGATCCTTCTGGGTCTGGGTGTTTTTGAACATTCCCTACGCTCTAC
TCCCTTTCGTCCTAATGGGCCCTACCCATTGAGGTGGATTCCAGACCTCTCCTATATCTTTGCCTTGGCT
CAGGCCTCTGACCCCTCCACAGCATCGACTCAAAGCAGAGAGATGGCCAAAATAGGCAGTCAGAGAAGAG
CACAGGCGTTCATTCCTATTGCGTCTGCTCAACCTCTCAGCCGCCCTGTCAGGGAGCCTCTCAGAATCAC
AGGCTGGGCCAGAGAGTCTTGCCCTCCTCATTCACAGTGTGAGAACAGAGTGACCTAAGAGCAAGGTCCT
TCAGAGGCTGTGTGCTGACTGCTGAAAAGCCAGAGAGATACTGCTGCGGATGTGGTGGTGTGCACAGGCT
CCTTTCCCTGGGCCAGGCTGAACTACGTCCCCCACAAGATTCTTTTCCCTTCCTCTGCTTGCATTGGTCG
TCAGGAGGGTTGTTAATGATTCACTACGAGAAACTTCTACTGTCAGTTTTTTCTTTCTTTTGGGGGGGAG
GGGGAGTGGAGTAGAGCAGGGTGCACCTGCAGAGGTGGCGGTCAGAGGACAGTCTGCCGGAGTCTGTTCT
TTCCTTCCCCGTATCAGTTCCTGGGAACAAACTCCGGTCACTAGGCTTTGCAGCCAGCACCTTTATCTAC
CTCGAAGGTCCTTGTCATCATTTTTTAACCGTTTTTCCTGTTGTTCTTCTAAACAGCAGAGCCTTGAGTG
TCCTGGAGTTATTTTGTAGCCCATATTGGCCTCAGACTCAGAGAGATCTACCTGCTGCTGCTTCTTGGCA
TTTGCCACCATGCCCAATATGTTTTTTTAACTCTTAATGAACTGCCATACGGGAACGATACCCTTAAATA
AAGGCAGGCGATCCTAACAGACTTATTCATCAACTGACTGATTAGAAACCTCTTGCTGAGCACTGGCAAC
ACTGTGCTCTGTACTGCACAATTTGATATGAATGAGGATTGAAGAGACATAAAAAGTGAATTCTTGATCC
TAACTCTCAGAGTTTGTTTTTGTTTTTCCAGTGCTGAGGATCCTACCCAGGACCTCACAATTTTTCCACC
GCTGAGCTACACCCCATCCTTCAGAAGGCTATCATCTAACAAGGACATAGGTACCCACACAAATCAGTGC
ACTCCAGAGGGAGGACAGAAGAGCC
(Equivalent human sequence - chr1:113540023-113542060  (UCSC human hg19 ))
Flanking Genes:Lrig2 - Slc16a1 (mouse)
Primers:Vector specific   fwd:(+)GGCCGTGCTTTTCCTTTACT rev:(+)GGCTCTTCTGTCCTCCCTCT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm143-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm143 VISTA mouse element 143 same experiment
 EMAGE:24106 same experiment
Data SourceVISTA