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EMAGE:24196

hs79 VISTA human element 79
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24196

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element hs79 - embryo 6.
Expression Pattern Description
Spatial Annotation:
EMAGE:24196Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24196_wholemount_strong.wlz
24196_wholemount_moderate.wlz
24196_wholemount_weak.wlz
24196_wholemount_possible.wlz
24196_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24196_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (10 out of 13 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (13 out of 13 embryos)
future spinal cord
detected detected
VISTA annotation: neural tube (8 out of 13 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:hs79 VISTA human element 79
Sequence:chr16:51056311-51057592  (UCSC human hg19 )
>hs79
TTTTGACCCACTCTCTGCTTCTTGGTAGATTCTAAGTACAGATCTAATTATTTTTTCCTTCAAGTATTAA
GCGAATATCTCTGCAAACAAATCCAAATTTAGAAAGCTAGATTGAAGAAATGGAGAAGCAAATCTAGTCA
ACTCATAGAAATCTTTCTTCTCCTCTCTTGCTCTGTCTCCAAGAGAACCTCTACACCTTCTTTTAAGGTG
CCAGCCATCTTAAGCTCTTGTCTGATTAAGAAATTCTCTGGTAGAACCAGAGCATCTGCAAAAGCATAAA
ATATGATCACAGCCTTTGCACAAGTATTTTAACAACCCAACCTTATGATAGGTTATATTTCATTGACTTG
GAAGAAACACTGCATTATCTGGGAAAACAGCACAGATGTTGCCTAATAAACGTTTTGGTTTATGCATTGT
ATTAACCTCATGAAACATTTATGCAAATCTCACATTAACAAAAGGTAAAAGAACCATTCTATGTTATGAA
GCATACAACAGGATGATCTTTGTCATGTTTTTGTTTCTGTTGTTGTTGTTTCACCTTGGTATTTTATGGG
TCTGTTTGTAACTCTTGGAGTTTCTATTTAGGAGGACACAAGAGCATTGCAGATTTTCATCTCTTCTGTT
TTCAGTTCTGTTATCATCCCTTCCAGCTGACTTCACATTTTATGATGCTAATGGGGGGTGTGTGGTTTTG
AGTTTCTCTCCTGTCAGCTGGTCAGTGGGTCTGAGGGATATATTTAATAGAATCTGACAGCTGATGGAAC
TGGCCTCATTGAAAGAGGATTTGATATGTGGAGTGAATGTGGCGACCCTGAAATCGCCATAATAACGGCC
ATTATTATTCTGCCTCTCGCAGCCAATATAACTCTCCCTCTTGTACACACCAGTACATGTGTATAAAAGA
CATGACTTATGGATGGTTTCTTCCGTACACTGATCTGAGGGCCATTTAGATAGCATGTCAAAACAGATTA
ACTGTCTTATCCTGCCACAAAATTAAGGGGGGGAAAGAGAACTTTACACAACTCTGCCCAACATATGCAC
TCTGTGCCCATAAACAAAGCCAGCACAGAAGGGCCACAGATTGTCTCTGGGTGGGGGTTAAGAGAATCAG
GCACCCAGAAAAGCTGCAGGCTCACCCACTTAAGGTGCCCGCTCCAGTGAGGACCCAAGGGCACTGCCTG
AGATATGGTGAGGGCAGCTGGAGCCACAGGTAGGAACCTACCTCCTGAAAGGCTGGTGCTATGCTTTACC
TGTGTGCATGTGCCTGGGATGT
(Equivalent mouse sequence - chr8:91462919-91464123  (UCSC mouse mm9 ))
Flanking Genes:CYLD - SALL1 (human)
Primers:Vector specific   fwd:(+)caccgacccactctctgcttcttggtaga rev:(+)acatcccaggcacatgcacaca
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Mutations:Tg(hs79-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:hs79 VISTA human element 79 same experiment
Data SourceVISTA