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EMAGE:24243

mm94 VISTA mouse element 94
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24243 EMAGE:24243

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm94 - embryo 3.
Expression Pattern Description
Spatial Annotation:
EMAGE:24243Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24243_wholemount_strong.wlz
24243_wholemount_moderate.wlz
24243_wholemount_weak.wlz
24243_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24243_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
limb
detected detected
VISTA annotation: limb (3 out of 5 embryos)
mouse
detected detected
VISTA annotation: other (3 out of 5 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm94 VISTA mouse element 94
Sequence:chr6:122342623-122346341  (UCSC mouse mm9 )
>mm94
CAACAAATGATGCGTCAATGTGCCCAATGAGGTCTAGCTAGCTCAGCCACAAATGTATTAAAAATAAAGA
TGTTTATGCTTTCTACAAGCGTTAGTCACTGGGTCCTCAGAATTTGACCATTCTTTAAAGTCCTGAACTC
ACAATCATCTTATCCACCTCTAGCTCTGTCATGACTTCAGGAGGTGTCGAGAGGGGGGTGAAGAGAAGGA
GAAGGAAGAGGAGGAGGAGCAGGAGGGGGGAGACCAGGAGGACGATGGGGGTGGTGGAGAAAGAGATTTC
AGCATAGATCTAAACACCAAAGATTTTCTAAACGGCAGGTACAGTGTGACAACCGACTTTGATGCTCTCT
CCACACTGCGCGCTGAACTTGCTTTGCCTCCAACTCCGGAACACACACGAGATCTTTCTCTTCACCTAAC
TCCTTCCTCCACCCCCACCCCTTCTTGACAGGGTTTTTCTTTGTAACCCTGGCCGTCCTGAAGCTTCCTT
GTTCTGTTGCTCTGTAGAGCAGGGCGGCATCGAACTCAGAGATCCGCTCGCCTCTCTCTGCCTCTCGAAT
GCTTGGTCCAAAGGCGTGCGCCACCGCTGCTCTGGCCCAACTCATTTTTTTACTCTTCTCTACTCCCCTC
TCACCTGATTGCCAGAGCACATCTCCATGAAGAACTGCATTTCGTCAGCTGTGACAGCTCTGCTGGGAAA
TGGGCTGTGGATGATGAGGGAAGGGGGCGGGGGCGGTCTGGAGGTGAAGGTCAATGAGAGCAGGAGCCTT
CCAGGCCGGAAATAGAAGAGAGATGGCGGAAACAAGAGCCACATGTTCACCTACACAAGCCATTCTACAC
ACACCTCTGCTCTGCTCAGTCTGCTGAGGCCTCGGGGTCCACACTGCCTCGAAGTCGCTCCTTATCGTTA
GCATTCTCCTCCAGTTGTCTCTGTGCATAGGAACTCTTATCTAGGATTGTAAAGCATCGCTTTCCCTGAG
ACTACGCATACGCACTCACCTTTCGCTTTAACCCTCAGGTGTTTCTGCCCCTCCATCTGCGAACTTCCTT
TCCCTGGTGACTAATGAAGAGACAGAAAACCCCTCAAAGCTCAGAAGTCAGTTTCTTTCCTCTGGGGCCT
CCCTAGGGGCTATGTCTGTATCTCACCACGAACAGCAGCTCTACGCACGTTTCCAGAGCCTGTGCATTAC
CTCACCGAGCAGCTGTGTGCTTATCAGAGGCAGGGGCTGCCCACAGGGCCTGATGACCGCTGTTCTCCAA
GTGGAGGCTTGGCTAAGAACCAGAGTAGAGGTTGGGCAGAAACAAAGGACCAGAGAGCATAAAAGCGATC
CCCCATGGCAGGTCATTCTCTAGAACTTTCCTAGGATCTCCAAGTTTTATCATTTTACAATTCTCATAGC
ATAAGTCAGCTAAAATCCATCCTCCCAATTTTTCCTTATGCAGTGGTTCAATGTGATGGAAATGGATCTT
AGGCTGTCCAGGGCTGACCAGGCATCTGGTTCTCAGGAGGAGAATGCTACTTCCTACACACGACCTGTGT
ACTCTCACCGGATCTAGAACCCGGTGGCTTCTATCTCAGCAGGCTGGCAGTCTTGATCCTACCCAGTGCC
CACTGCCAGTTCTCAGCTGCCTGCCTGACTCTCAGAGCTCCTCAGGCCCTGTCCCCACCCTCGGTTACCC
CTTGGCCTCCCGCTCCCTTCTCAGAACCCTGTCTATATGGTCACTGTGACTTGTTATCTTCTGCACACCT
CTCCTCATTCTGCTGGGTCGAGACGTTTGTTTTTAGCTTGCTGGAGACAGAGATAAGACAGAAGCAACTG
GAAAGATCCAGAGGAGAGAATGTCATAGACATTGAGAAGATAAGGAAACAGAAAGACTCCTGCTCACCCC
TCTGAAGGTTTATTTGAGTCTAGTTCCTTCTGTCACCATGAGTGGCCAATAACTTGTTTGTCTTTACACA
CTGCTTTCTGTCTACCAATTTGGAGTTGTGCTTCCCTAATGAGGCTGCCAGGGATGCCAGTTTTCAGTTT
GCTTTAAGAATATAGTCCAGAAGACGGGTGATAGTGGTTCGTGCCTTTAACTCCCACACTGGGGAGGCAG
AGGCAGGTGGAACTCTATGATGTTGATGCTAACTTGGTTTATAGAGCCAATTTCAGGACAGCCAGGGCTA
CACAGAGAAACCCTGACTCAAACAAACAAGTAAACAAATAAATGTTCCAGGGCTGGAAGGCCCCAGAACT
CACAGGAAGGTTGAAGGAGAAAACTAATTCACAGAGTTGTCCTCTGGTCTCTATATACTCACCAGACACA
CACACACACACACACACACACACACACACACACACACACACACAGAGCGACAGACAGACAGAGAGAGACA
GAGAGATTGTATTATGTGTGTAGTGTATACACATGGCAGTGAAGGACTGGGAGTACAGCTCAGTGGCAGA
GTGCTTACTGAGATCAGTCCTCAGCACTAGCAACAATCAAATCAAATAAAACACGGAGCGATGGACTACA
GAATGAAACTGTTTCTGAGTCCCACAGTCCCCCTCCCTCTCCTCCTCCTCACCGTCCTCCCTTCAGCTCC
GGCCAGCAACATTTTCCTGGTTAATTTCTCATTTTGTTTTCCTATACAGCTATCCTGGGTTTCTGTTCAA
ACTCTGCATTCAGTCCTCACCCCCCATGCCCTGTTTTATTTCAAGATGCTGCAGTACAGTTGCCAGTAGG
TATGTGCCAATACTGAACACGTGACAGCATCCAGTCTTCATGGTTCCTGACACACAGTGACTTGTAACTG
AGGTATGTGTTAAGGATTAAATGTGTGCTGAGTGGAAAAAAAAACTTAGTAAAAAAAAAAAACCTTTCAT
TCTTTTGGCTTTTTGAGATTGGATGTGGAGTAACGTCAATCTGACCTTGAATTTGCAATCGATCCTTCTG
CCTCTGCCTTCTTAATACTGAAATTACAGGCAAGGACCACAAGCCTAGCTGGGTTTCCTTGTTTGTTGAG
ATGGGACTTGTGTAGCCCAGGCTATCCTTGAACTTCCTATGTAGCCAAGAATGACCTTTGTCTTATTAAG
GGTTTCCATCGCTGTGAAGAGATACCATGACCAAAGCAACTCATACAAAGGGAAGCATTTATCTGGGGCT
GGCTTATAGATTCAGAGGCTTAGACCATTATCATCATAGAAAGCACAGCAGGAAGCATGGCAGCATGCAG
GTAGACGTGGTGCTGGAGAAGGAGCTGAGAGTTCTACATTTTGATCTGAAGGCAGCCAGGAGAGACTGGC
ATTCTTAGGCAGCTAGGAGGAGTCTCTCTTCTGCAATGGGTGGAACCTGAGCACAGGAGAAGACCTCCAA
AGACATCCTCACAGTGAAACACGTCTGCCAACAAGGCCAAACCTCCTAATAGTACCACTCCCTGTGGGAA
AATAACGTATTCAAGTCAATACATCCCACTCCCTGGCCCCCATGGGCTTGTTCAAACCCATGAGTCTATA
GGGACCACACCTATTCAAACTACCACAACCCTGAACTTCTGATTTCCTGCTTCTACGTCCTGCGTTTGGG
GATTCTAGGTCTATACCACCATACCCAGCTTTCCAATGTTTTAGCCTTTTAACCATGTCTGTAAAATTCT
GCACTTACATACATGTCCTGCCCTTCATCTCCACCCAGGCTCTGTCTCTCACCTCTGGCTGACCTCCCTC
TCAACATCC
(Equivalent human sequence - chr12:8995986-9002252  (UCSC human hg19 ))
Flanking Genes:Phc1 - Rimklb (mouse)
Primers:Vector specific   fwd:(+)CACCAAATGATGCGTCAATGTGC rev:(+)GGATGTTGAGAGGGAGGTCA
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm94-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm94 VISTA mouse element 94 same experiment
 EMAGE:23968 same experiment
 EMAGE:24067 same experiment
Data SourceVISTA