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EMAGE:24287

hs1004 VISTA human element 1004
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24287 EMAGE:24287

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element hs1004 - embryo 5.
Expression Pattern Description
Spatial Annotation:
EMAGE:24287Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24287_wholemount_strong.wlz
24287_wholemount_moderate.wlz
24287_wholemount_weak.wlz
24287_wholemount_possible.wlz
24287_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24287_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (3 out of 10 embryos)
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (7 out of 10 embryos)
limb
detected detected
VISTA annotation: limb (4 out of 10 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (8 out of 10 embryos)
nose
detected detected
VISTA annotation: nose (5 out of 10 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:hs1004 VISTA human element 1004
Sequence:chr9:82681268-82682692  (UCSC human hg19 )
>hs1004
CCAACCCCATCTAATTGCAGTAATGGAGATTTACTTTTGAGCTATTCTGAGGGATGGTTTTATCTACTGG
GTGGCAGAGACCCTTTCATGCAGCAGCAAAATATAAGTATCCCAATATGCCCTTTTCATTCTCCTTTCCA
GGGCCCAGAGCATGAGATCAGATCAACTCAAATCTCTGAGAAATAGTGCTTTCTACTGGTAGTTATTATT
CTGCTCATTTTTAAAGTTACCTTAATTTTTTTTCTCTCCTTGTTGCGCTGACAGCCTGAGGCATCGAGAA
ATACAAACCCATCCCAAAACACATCCAGACATTTGCTTGTCATGCCTTATGTTTGTATTTTTGACCGTTT
GAAAATTAATTAAGAGATGTTGATTTCAAAGTGTTTTTTCTAAGTTTCCCAAATATTTAAACAATTTTTA
CACACTTTTTAAAATTTCCCCTTTCTCTGTTTGTAATAAGATTAATTATGTGAGGTGCACCGCTGCTTAT
CCCCATGAAAGAAAATCTAAAACGAGGGATTTCAGCTTCAAGAAGGCTATTTTGTCCTGTTTCCGATGTT
CTAAGGGGATTAATTTACCATATCGTATAGCCCTGGAAGACTGTGATAATTGAAAACATCCATATTCATT
GCATGTTCAAAGGGATCTGTCTGACTTTGTAATGTAAAAAGTGCATTTTTAACCTGAACGGGGACCTGCA
TCTGCTATTGCTTAATCCTATTAGTCCGACAGTTCCAAAGCTTTAGTGTATAATCATTAGCTCGTGTTAA
TCCTGAGACATGCCTCCAGCTTCAGCCTGCCAGAAGGAATCCCTGCAGGGAAAATGTGGAGGTGCTGATA
GCACAACACCAACTAATCTTATCTTAAATGCTAGCAGCAGCCTCTATCTGTGATAGCCGGGGAATTAAAA
ACAAATTTTTTATGGGTATTGGATAGCAGGGTGTTCCTAACCACATCCCCCTACCCACCAGCCTCTCTCT
CTCAGCTTTTTCCTTGCCCTAGTTTCCCTAGATTATTTGTTAGGGTGATGCTAGTGATGACAGAACAGGA
TGAATGGAAACGGGGTGGGCGAAGAAACATTTAAGATACTGTTTCAGCAGTGGAAGCTCCTTGCTAAATC
ACTTAGGATACTTGCCAGGTCTTCTATCATTTTTATTCCTTGATGTCAGAAAGTTGAGCCAATCCTGTCC
TTTGCACTGCTGTGGATTATAAAGTAAGATGACAAAATTTATCTTACAGTCATCACCCCTCCCATGGCAT
GGCCTCCTGAGAGTCTAAGATCTAGGACCCCAGATACTGATACAAGCTTGCCTAAGTAGAAAGGTAAGCT
GCCATAGAGTGGTGAGGCTAGCAGGTGAGGATTTCATGGGTGGGGAAGAAAATGGCCATGGGGGATTTTG
AGAGTAGGAGAAAGTGTGGGTTTGC
(Equivalent mouse sequence - chr19:14197731-14199119  (UCSC mouse mm9 ))
Flanking Genes:TLE4 - TLE1 (human)
Primers:Vector specific   fwd:(+)CCAACCCCATCTAATTGCAGTA rev:(+)GCAAACCCACACTTTCTCCTAC
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Mutations:Tg(hs1004-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:hs1004 VISTA human element 1004 same experiment
Data SourceVISTA