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EMAGE:24343

mm247 VISTA mouse element 247
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24343

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm247 - embryo 3.
Expression Pattern Description
Spatial Annotation:
EMAGE:24343Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24343_wholemount_strong.wlz
24343_wholemount_moderate.wlz
24343_wholemount_weak.wlz
24343_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24343_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
mouse
detected detected
VISTA annotation: other (7 out of 13 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm247 VISTA mouse element 247
Sequence:chr6:117229227-117230427  (UCSC mouse mm9 )
>mm247
TGACTGGAAAAATGCAATGGTTTGAATACTAACTCATGCGCTGTCTGAAATTTTAGGAAATCAGTTGTTG
ACAGTGAGAAAATGCAGCATTGCAACATTCAAGAAAATTCCAACAGCATTGCTTTCTGCCTTCCTGGACT
CAAAGACAGGGGGCTCATTTGGGCTTTTGTCACATTCTCAGTTATGCTGTGGTCACCACTGGCTCCTGTC
CCTCTTCTGTGGGAGGTGACAAGCCACATTGCCAACTAACCAGCCCATTCCCTGGAGCCTTGCTGCTTCC
TGGTTCATTCCAAAGTCTTCCCAGCATCTTCTCTGGTTCTGATTTGTCCTCAGCTGCCCACTGAGAGCTG
AGCTTACCATCTGGCTAGCCTTCTGTGGCTGCCTTGCTTTTCTGCCACTGACTGTCCCTACTTGTGCTGT
TGTTGTACATGGGATGTGACCTGAGACCAGCATGATGAGTGAGAAGAAAGGCAGGGACCTCCCATCCTCG
GCTTGACTGCCGTGGCTTCATTTAAGCCATTTCACAGTAGGAAGGGAAACTCGTGATGCTAGGCTGTTTC
CCCCTCCCAGAACTGTGAACCCAGCCCTAGATAACAAACCATAGCATCTCTGCATCCTCCCTCCTTTGTC
AGTGCCACCCCCATTCCCTAGAAATTTCCAGATAGTGTGGAGAATCCCAAGAGCCCAAAGTGGCCAGATG
CCTGGCGTGCACCCTGCTCCTAGAAGAATGAATGAACAAGACTTGGCTTCAGACCGTCCCTTCTTACCGC
CTGATGGAAACTGGGAACAAAGGACCCTGTGAGCTCCCCCTCCACCGCGTACAGAGCAGGGAGAAGCTGT
CTTTCTGAGCAGTAGCAGATCTGTGTGACATGCCACTCCAGACGAAACAAAGCTAGAGCCCATGGCTATT
AATACTTCAGGCCAGTTCATCCTGAGCTGTCAGTGGCCACAAAGCACAAGGTAACACAGTCCAGCTCCCG
AGCCAGCCTCGGCCTCTGTGAATAATTAGCGCTAAGTATGAGATGTGTGGCTGGATCTAATCTAACCCAA
GCTCAATTATTTCACTCAACTGATTGGGTCCTGCCTGGAGCCTGTTCTTCCCGCCTTGGCAGGTGTGCAG
CAAGCGCCAGGGACGCACTCCCTGTCCAAATGGGACCGTGTGTCTAGAAAGCAGCTACAGGAACCTCTGA
GAAATTCGATC
(Equivalent human sequence - chr10:44756735-44757992  (UCSC human hg19 ))
Flanking Genes:Cxcl12 - Zfp637 (mouse)
Primers:Vector specific   fwd:(+)TGACTGGAAAAATGCAATGG rev:(+)CACCGAATTTCTCAGAGGTTCCTG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Mutations:Tg(mm247-Hsp68-lacZ)
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm247 VISTA mouse element 247 same experiment
 EMAGE:24341 same experiment
 EMAGE:24342 same experiment
Data SourceVISTA