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EMAGE:24374

mm435 VISTA mouse element 435
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24374 EMAGE:24374

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm435 - embryo 4.
Expression Pattern Description
Spatial Annotation:
EMAGE:24374Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24374_wholemount_strong.wlz
24374_wholemount_moderate.wlz
24374_wholemount_weak.wlz
24374_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24374_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
head mesenchyme
detected detected
VISTA annotation: facial mesenchyme (14 out of 14 embryos)
forebrain
detected detected
VISTA annotation: forebrain (14 out of 14 embryos)
nose
detected detected
VISTA annotation: nose (14 out of 14 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm435 VISTA mouse element 435
Sequence:chr3:121750389-121752165  (UCSC mouse mm9 )
>mm435
GACCAGGGCAGTAAATGTAAAGTAATATTGCATCTATAACCCCAGTGCGTGTCTGACCTGCATGCCTGAG
GGAGAACGGAGCATAGCCCTTGCCTGGTGGAATGTGTCAGGCAGAAGGAGGCTGCCACGTGATTCCTGAG
CAGAAGTGGAAGTCCTGGTGGACGGAGTGGGTGGAAGCATGGGGTGGGGAGGGGCCGGGAATTCAGAGGC
AATGTCTCAGGATCTTAACCCTCACAGCCCTGTCTCCCAAAGGCTCTGTCCAAAATCCTACTTGCCCACT
CTGGTAGGCCAGAGTTAGCACAAGTTTTTCTTCCATATCCTAGAATCCTTTGGTGTCCCCAGGTCCCCAC
TTGCAGAGGACAGGATGTTGGGTGAAGGCCTGAGGACTCATAAAAACAGGGGTTCACAACCAGGTGGTAG
TGGTGATGGCCACACCTTTAATCCCAGCACTCAGGAGTCAGAGGCAGACAGCCTGGTTTATAGAGTGAGT
CCCAGGACAGGCAGGGCTACACAGTGAAACCCTGTCTAGAAAAAATAAAAATGGGGCTCGTGTCCTAAAC
TCGGGAGGCGGGTGCCTGGTATTGCTGTGGCCTTTAGTGCTGGCTCAGCATTGGGCGAAAAGAACATAGG
GGTACAGGGAGGCTGGCACCAGCTGCAAGTATACTAGGCTCCGGGTGGCATCGGGCCAGGTTTGAGTCGC
GTCTGGCTTCTCAGCCCAGAAGGGAGGATCAGTGCTGTTGCTCTCCAGCTCTGCCTACCTCTCTTTTAAA
TTGAAAACAGAGAGGGAAGGGAGAAAACCCAACTGGCTGTTTTAAAACAACAAGCACAACTCTGCCCTGG
CCGGGAACCTTTCCTCCCCCATGTAGGCTGAATGGTAAAGATGTGGGGGGAGAGGAGGCAAGGAAATACC
AGGTTAGTTTAAGAAGCATTCCACAGTGGGGGCTTCTGAGCTTGGACTGGGCTTAATTAAAGTTGCAGAC
ATGTTTAAAGTGGGGAGGGGGAACTCTGGAGACATGTTTTTTATTATAATGTGGAATTTCTCCCTAGGGC
ATGCCTGTGTACACTTGAGCAGCAAGGGTAATGCCCTTCTGGGCTGGTGGTACTGATTCTGGGGGAGAGG
AAGAGGCTGCGAGGAGGACCCACCTGCCTCTGCTAGTCGGAGAATGAATGGCAGGTAGTCTTTGTGCGGA
GTGGCCTGCGAATGAGGCCGCTCTCGATCCCTGGCAGAGAAAAAACATCAGCTCCTCCTCCCCCTCCCCC
ACCCACCCCGTGCTTCCTTGAGATTGCCTGCTATGCTGAGATGGGGGAGGGGCTGAGAGGCCGCTGTTAG
TTTTCATTGTATTTCCTCCATCATCTGTCTGTAACCTGCTGTCACCCACTGTGCTCCTGTGGCCCTTGCT
ATGATTCTATGAGACATAAATGGTCTGTGTGCCAGGCTCTGCTTTCTGTGCTGGGCACGATGAACATATT
TCATGATTACAACTGCTCTGGGAGACAGGACTTGGTATCACTCCTTTTTGACAGATGCGTCCCTGTGACA
TGGAGAGGTTCAGAAGTTTCCTCAATGTCATAAACCCCAGTACTTGGCCCCAGAGTAGCCTGTTATTAAT
TCTCATTGTATACTATAGGACAAAACAACATCCCCATTTCATAGATGAGAAAACTGACAGAAAATGAGCA
AGCCCGAGAGTGGTTGAAACCCAAATGCTCACATTCCCAGGTCAGCACGGGTGGCATGTAGCATCCCATA
CAACTCATAGGCTGACACAATGCATAG
(Equivalent human sequence - chr1:94580867-94583522  (UCSC human hg19 ))
Flanking Genes:Abca4 (intragenic) (mouse)
Primers:Vector specific   fwd:(+)caCCAGGGCAGTAAATGTAAAG rev:(+)CTATGCATTGTGTCAGCCTA
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm435 VISTA mouse element 435 same experiment
 EMAGE:24372 same experiment
 EMAGE:24373 same experiment
 EMAGE:24375 same experiment
 EMAGE:24376 same experiment
 EMAGE:24377 same experiment
Data SourceVISTA