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EMAGE:24382

mm439 VISTA mouse element 439
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24382

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm439 - embryo 6.
Expression Pattern Description
Spatial Annotation:
EMAGE:24382Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24382_wholemount_strong.wlz
24382_wholemount_moderate.wlz
24382_wholemount_weak.wlz
24382_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24382_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
eye
detected detected
VISTA annotation: eye (6 out of 19 embryos)
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (11 out of 19 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (12 out of 19 embryos)
future spinal cord
detected detected
VISTA annotation: neural tube (12 out of 19 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm439 VISTA mouse element 439
Sequence:chr11:88087581-88089577  (UCSC mouse mm9 )
>mm439
AATAACTGTAGAACACTCCATCAGGCACCATCAATTTCCCCAACGTTGCATGAACACCCTTATCAGCTTT
GCATCCATCCACAGCTTTGCACAGATCTGAACGTTTGCTGTGGAGACGGATGTCTGCGCCTCCTGGGCCA
GAGCGGTTGTGCATTTACATTTTGATCAACATGGACGCGTTGCTTTTGAAAAGGCCTCTGCTTCCTCTGA
CACTCGGTGAGATGCCAATCTTCCTACATGTTCCGCAGATGTAGGAATCCCCACTAGCCTTCTCACCCTA
TTTTTCTGTCTTAGGACCCTCATACCTTAAATTTCCTGCTATTCTGCCACGGTGACCACATCATTTTCCT
AGATGGGGGGTCTATCCCCCTGGATGACAAGTTGCCCCCTACAATGAGATTTGCAGACGTCACCAGCAGC
CACTGTTTAATATTTATCGGGAGCCTGCTGCGTGCTGGGCCCACTCAGCAACCAAGAAGACCTCTGGGAA
GGAAACCTGCAGTGATTTGAAGGCACAGATTACTTAATAAAAAGCGACAGCCCCATCAGAGGCCACAGGG
GCTCCGCGACAGCCCCATCAGGGGCCACAGGGGCGCCGCTGATTCCCTGGACGTCTGTATGCCTCTAGTG
AAGCAGGTGGGGGTGTGTCCCCCCTCTGAGAAGCCACATTAAGAAGGCAGCTGGTCTCCTACAGGACGTC
TGTGCAATTCGATGGAGCTCATCACTTTCCGGTCTATGAGCAATTAAATTGCACCAGGAAGCCCTGTATC
CTTATATCATCCCCTAACGACTTTGGGCTGCGGGAGTTGGATGCAAAGAACCCACATCGGTGTGCAACTG
GCAAAGTCTCACCTTGTTTCAAGGGCCAAACATTCAGTGAAGTTCCAATTTGTCCCCCTGCCAAGACCAG
AAAGCAGCTGGCTTTGTCCCTGTGCCTCTGGAGTTAGGCACCCTTTGAACCCTCGGAACAGCTTGCCGAT
ACAGCCGCTTTTTTTTTTTCCCTCCGACTCTGATACCTTCAACCCAGCCCACTCTCAGTCCTGCTCCCCC
GCCCTAAAGACTTTTGTTTTCTGCAAGTCCCATCCCAGGGCCTGTCAGATTGCATTTTTTATTGCATGGA
GACAAAAAGCCATCTGGAGCCCCTGGTCTACTGACTGCGTTCCCAGGGTCTCCTGCCAGGCCCCCGATTA
AGAGTCACCCCCCCACACCAGCCCTCACTCTTTATTTTTTAACCCCTCCTCAAGCCCCTCCGCAGAGCTG
GTTGCCTTTGTCCCTCTGCTCTCCTCCTCACCCTGTCACTGAGGTCTGGCTACCTTGTCTTGGTGGAACA
ATGCGGGCTGTCAGCTTTTATTAAGCGAGCTGAGAAAAGCGCGGTGATTTCAGGTGGCTGAATGCTTACA
AATTCTGCCCTTCATTCTACCAACCCGGAGTTTCTTTCCTGGTTGCCAATAGACTTTTTTGAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTACTCCTCTCTGCTTTTCTTCTTCTCAAA
TATCAGCTCCAAAAACTAAGCAGCCCAGGGAGAGCCTTTGCAAGGTCATTTAGCCAAGGACACAGCACAG
GTGAAGATCAGCTGCAACAGCCCTGTTGGAAAGCTAGTCTCCAACCGCCTGGAGGGTGGAGGGATCTGAA
AAGCATCAGAGGCTGCCTCCCCCCCCAACCCCCTGTCCTTTCCTCCCCCCCCCAAGCCCACTTCAGTCTG
GGAGGGGTCCCAGTCTGGTGTTTGCAGTTAAGGATCCGTGCAAGCGTGAGCATGCGTGTGTGTTGCTGCT
ATAGGGTTGAAACTCAAGCTCAAGAGATCGATAGAATCCAGGTGTGTGGAGAAACGGCCCCAAATATAAG
GCACATAAAACTCTGTTTGTGGGTGTGAACTTGCCAGGCACAAAGGGAGCTCCGCCCTCTCCCCCTATGC
CCAGTTGGGGCAGGATGCAGAAGGGACAAGTGAGTGT
(Equivalent human sequence - chr17:55839263-55841081  (UCSC human hg19 ))
Flanking Genes:Mrps23 - Msi2 (mouse)
Primers:Vector specific   fwd:(+)caccACTGTAGAACACTCCATCAGG rev:(+)ACACTCACTTGTCCCTTCTG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm439 VISTA mouse element 439 same experiment
 EMAGE:24378 same experiment
 EMAGE:24379 same experiment
 EMAGE:24380 same experiment
 EMAGE:24381 same experiment
 EMAGE:24383 same experiment
 EMAGE:24384 same experiment
 EMAGE:24385 same experiment
 EMAGE:24386 same experiment
 EMAGE:24387 same experiment
 EMAGE:24388 same experiment
 EMAGE:24389 same experiment
 EMAGE:24390 same experiment
 EMAGE:24391 same experiment
Data SourceVISTA