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EMAGE:24397

mm447 VISTA mouse element 447
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24397

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm447 - embryo 2.
Expression Pattern Description
Spatial Annotation:
EMAGE:24397Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24397_wholemount_strong.wlz
24397_wholemount_moderate.wlz
24397_wholemount_weak.wlz
24397_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24397_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (10 out of 12 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm447 VISTA mouse element 447
Sequence:chr19:59341618-59342768  (UCSC mouse mm9 )
>mm447
TTCCAGTTGAAATGTTCAGTCCATAGTAGTAGCTATGTGTCAAGGGAGACAGCAGGATTCTGAGAGTGAG
TTCTGTCGTTGTTTGCACTAAGTGACTTCTACACATGTATGTATGTAAATGCTCTATACAGACAAACGTT
ATGAAAACATCATTACCTTTTTTCCTCTCACAAATCAGGAAAGGTATGCTCTTTGTCTGCTTTTCCATCT
CTCTCCTTCCCTCTCCTTTCACACGAGAAGGTTTAAGTTCAGATGCTAAGCATGAGTAGTCCTCAGTCCA
AGCGTAGCTGGTCTGTCTTCACATGTTCAGCATCCGCTTTAAATAGTACTTGCATCTTTAGAACCAAAAG
CTGTTTCAAGCCAGCAGATGGCCTGGGAGCAGCAGCCCCGTGCCTGGGAGGGGCTCCCTTCACTTCCTTC
TTAGCCTGTCATTGTCTGGGTGGTCTGCTTTTTATCAAGCTAGTGTCAAAGGCTTAATTTATTCCCATAG
TTACCTAGTATATTTGAAAAGCAGTTGTTTTTCCTCCCAGATCTTAGCTAACCCCGAATGACAAGCAGGA
AGCCACAGGGCATGAATGCTTTCTGAAATCTTTTCCTTTAGCTTCAGCCCCTTGGTCTGAAGTAGGCTTT
GTAGAAAGCACTGACCTTTTCAGCTCATCTGCAGACAGGGAAACCAGCTGTTTGGGACAGGGATCTCCCA
TCCTAGACATCACTGGTGCGGGGAGGGAGGAGGGCAATGATCTCACAGTGGGCTTCTCACACGGAAAGCA
GAAGGAACCAGGAGTTAGAGCATGCTCCTGTGAGCATGGGGACTCACACATAGGCAGGTCTGCTGTTCAC
ACAGGTCCTTGTACACATGTAGCCCAAACTCCAGCTGACTCAAGGGCTGGACTTAAGGATTTCATTTCAT
TTCCTAAATACTGAACAAACTTCCTGTTATAGCTGAGTGAATTTGAGATATTCCTGTTTCTTGACATTAA
TTTCCTGTTGTACCTTTTAGGGGTGTGCAGAGATTATTATAAGGGAGGCTGAGCCACTGCTGGTGACAGA
TCGAGCTCTACAGCATCCGGTTTATATCTTATTCTTATTTATATCTGTCTTCTCTTGTCATTTACAGTGA
CTGAGGGGGGCTGTGCTATCATCTCAGCAAG
(Equivalent human sequence - chr10:119008064-119009156  (UCSC human hg19 ))
Flanking Genes:Slc18a2 (intragenic) (mouse)
Primers:Vector specific   fwd:(+)caCCAGTTGAAATGTTCAGTCC rev:(+)CTTGCTGAGATGATAGCACA
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm447 VISTA mouse element 447 same experiment
 EMAGE:24396 same experiment
 EMAGE:24398 same experiment
Data SourceVISTA